- Feb 09, 2021
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_launcher_4_many_communities.py: add pointsize argument in mantage command
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/tad_to_communities/tad_to_communities.py: creation of functions targeted_tad_to_communities removing_chr and targeted_bedtools_intersect to convert custom TAD to communities
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nfontrod authored
src/find_interaction_cluster/config.py: fix merge problem by re-creating function get_communities_basefile
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- Feb 08, 2021
- Feb 05, 2021
- Feb 02, 2021
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nfontrod authored
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- Jan 27, 2021
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nfontrod authored
src/find_interaction_cluster/__main__.py src/find_interaction_cluster/community_finder.py: add the parameter use weight
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nfontrod authored
src/find_interaction_cluster/community_calibration.py: creation of input and output for hipMCL inside it's result folder
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nfontrod authored
src/find_interaction_cluster/clip_figures/__main__.py src/find_interaction_cluster/clip_figures/clip_analyser.py: ad dinflation parameter
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/community_finder.py: add inflation parameter to multiple_community_launcher function
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nfontrod authored
src/find_interaction_cluster/*.py: add a parameter inflation in get_community_file function broadly use in this submodule
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nfontrod authored
src/find_interaction_cluster/community_calibration.py: create a script to see the variation of modularity when the inflation parameter changes
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nfontrod authored
src/find_interaction_cluster/community_finder.py: fix create_graph to use weight if wanted + add 2 paramters in findo_community functions
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nfontrod authored
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- Jan 25, 2021
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_analyser.py: change in add_regulation_column to display if the gene contains an exons regulated by a splicing factor rather than the proportion of regulated exon inside each gene
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- Jan 21, 2021
- Jan 20, 2021
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nfontrod authored
src/find_interaction_cluster/community_figures/fig_functions.py: change de offset between community_size and community_data axis
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_analyser.py: deletion of files=[files[0]] in clip_folder_analysis function
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nfontrod authored
src/find_interaction_cluster/community_figures/fig_functions.py: handles community_data column + fix logit test
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nfontrod authored
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nfontrod authored
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- Jan 19, 2021
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alapendr authored
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alapendr authored
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alapendr authored
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: fix update_composition_group function
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/clip_figures/__main__.py: add 3 new parameters: display_size, community_file and ps
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_analyser.py: add 3 new parameters: display_size, community_file and ps
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nfontrod authored
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/nt_and_community.py: add 2 new parameters to multiple_nt_lm_launcher: display_size and community_file + creation of launcher_community_file function
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nfontrod authored
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