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LBMC
ReGArDS
ChIA-PET_network
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6be00fec846aacd52c5e6c6dc961cff34a417405
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chia-pet_network
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authors
fmortreu
fmortreu
hpolvech
hpolvech
Laurent Modolo
lmodolo
Matthaus Sirvent
msirvent
nfontrod
nfontrod
5 authors
Feb 25, 2021
src/find_interaction_cluster/clip_figures/clip_analyser_fake_community.py:...
· 6be00fec
nfontrod
authored
4 years ago
6be00fec
Feb 22, 2021
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: avoid merging adjacent TAD together
· 3848b553
nfontrod
authored
4 years ago
3848b553
src/find_interaction_cluster/clip_figures/communities_similarities.py: Create...
· c04d7383
nfontrod
authored
4 years ago
c04d7383
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: the...
· 8907d939
nfontrod
authored
4 years ago
8907d939
src/find_interaction_cluster/clip_figures/clip_analyser.py: fix bedtools intersect function
· 5f9c7b75
nfontrod
authored
4 years ago
5f9c7b75
Feb 17, 2021
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: chnages and...
· 17441b57
nfontrod
authored
4 years ago
17441b57
src/find_interaction_cluster/clip_figures/clip_compo_launcher.py: pep8 changes
· 1712468f
nfontrod
authored
4 years ago
1712468f
src/find_interaction_cluster/clip_figures/clip_launcher_4_many_communities.py:...
· b40c5634
nfontrod
authored
4 years ago
b40c5634
src/find_interaction_cluster/clip_figures/config.py: add arrowhead communities
· 807422b4
nfontrod
authored
4 years ago
807422b4
src/download_encode_eclip/merge_eclip.py: modification of merge_files function...
· 7028126e
nfontrod
authored
4 years ago
7028126e
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: Add a step that...
· 01dcc3c6
nfontrod
authored
4 years ago
01dcc3c6
Feb 09, 2021
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: change in liftover...
· d150bfc6
nfontrod
authored
4 years ago
d150bfc6
src/find_interaction_cluster/clip_figures/config.py: add communities and communities_name variable
· b8a9512f
nfontrod
authored
4 years ago
b8a9512f
src/find_interaction_cluster/clip_figures/clip_launcher_4_many_communities.py:...
· 8100dae6
nfontrod
authored
4 years ago
8100dae6
src/find_interaction_cluster/tad_to_communities/config.py: Add target_gene and target_exon values
· 7a662fe1
nfontrod
authored
4 years ago
7a662fe1
src/find_interaction_cluster/tad_to_communities/tad_to_communities.py:...
· d755fefb
nfontrod
authored
4 years ago
d755fefb
src/find_interaction_cluster/config.py: fix merge problem by re-creating...
· 569867e4
nfontrod
authored
4 years ago
569867e4
src/hic_TAD_caller/create_TAD_HiC_files/__main__.py: creation of a function...
· fd7239e6
nfontrod
authored
4 years ago
fd7239e6
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: add a parameter resolution
· 00fdcad8
nfontrod
authored
4 years ago
00fdcad8
Feb 08, 2021
Merge branch 'master' into dev
· 721082b5
nfontrod
authored
4 years ago
721082b5
src/find_interaction_cluster/clip_figures/clip_launcher_4_many_communities.py:...
· 6f00da86
nfontrod
authored
4 years ago
6f00da86
src/find_interaction_cluster/clip_figures/config.py: add variables communities...
· 6a6f734d
nfontrod
authored
4 years ago
6a6f734d
src/hic_TAD_caller/: Script to call TADs with ArrowHead from different Hic...
· 91739e3b
nfontrod
authored
4 years ago
91739e3b
Feb 05, 2021
src/find_interaction_cluster/clip_figures/__main__.py: add a parameter cell line
· a88295f6
nfontrod
authored
4 years ago
a88295f6
src/find_interaction_cluster/clip_figures/clip_analyser.py: add a parameter cell_line
· 387d5650
nfontrod
authored
4 years ago
387d5650
src/find_interaction_cluster/*.py: add a cell line parameter
· fe9f7b58
nfontrod
authored
4 years ago
fe9f7b58
add a cell line parameter
· 59c9b619
nfontrod
authored
4 years ago
59c9b619
src/nt_composition/make_nt_correlation.py: add a cell line parameter
· 55dcced8
nfontrod
authored
4 years ago
55dcced8
Feb 02, 2021
src/find_interaction_cluster/community_calibration.py: add a parameter cell_line
· caca2361
nfontrod
authored
4 years ago
caca2361
src/nt_composition/config.py src/nt_composition/distance.py...
· 11143bf3
nfontrod
authored
4 years ago
11143bf3
Feb 01, 2021
src/download_encode_eclip/merge_eclip.py: script used to merge encode experiments
· 804ef546
nfontrod
authored
4 years ago
804ef546
src/download_encode_eclip/config.py: add a parameter merged_output
· 4cd1a60e
nfontrod
authored
4 years ago
4cd1a60e
src/figures_utils/config_figures.py: add a parameter to get_good_project to...
· 6a8961cf
nfontrod
authored
4 years ago
6a8961cf
src/download_encode_eclip/get_encode_clips.py: modifications to be hable to...
· 3d24accb
nfontrod
authored
4 years ago
3d24accb
Jan 27, 2021
src/find_interaction_cluster/__main__.py...
· 98ba7455
nfontrod
authored
4 years ago
98ba7455
src/find_interaction_cluster/community_calibration.py: creation of input and...
· 4a363356
nfontrod
authored
4 years ago
4a363356
src/find_interaction_cluster/clip_figures/__main__.py...
· cc536f0b
nfontrod
authored
4 years ago
cc536f0b
src/find_interaction_cluster/__main__.py: add inflation parameter
· 0b1767bd
nfontrod
authored
4 years ago
0b1767bd
src/find_interaction_cluster/community_finder.py: add inflation parameter to...
· c97e4856
nfontrod
authored
4 years ago
c97e4856
src/nt_composition/__main__.py: add inflation parameter
· df60bf2a
nfontrod
authored
4 years ago
df60bf2a
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