Commits · 387d5650cd6ec559583b392fc7e52f3c4bdafa86 · LBMC / ReGArDS / ChIA-PET_network · GitLab

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Feb 05, 2021
- src/find_interaction_cluster/clip_figures/clip_analyser.py: add a parameter cell_line · 387d5650
  nfontrod authored 4 years ago
  
  387d5650
- src/find_interaction_cluster/*.py: add a cell line parameter · fe9f7b58
  nfontrod authored 4 years ago
  
  fe9f7b58
- add a cell line parameter · 59c9b619
  nfontrod authored 4 years ago
  
  59c9b619
- src/nt_composition/make_nt_correlation.py: add a cell line parameter · 55dcced8
  nfontrod authored 4 years ago
  
  55dcced8
Feb 02, 2021
- src/find_interaction_cluster/community_calibration.py: add a parameter cell_line · caca2361
  nfontrod authored 4 years ago
  
  caca2361
- src/nt_composition/config.py src/nt_composition/distance.py... · 11143bf3
  nfontrod authored 4 years ago
  11143bf3
Feb 01, 2021
- src/download_encode_eclip/merge_eclip.py: script used to merge encode experiments · 804ef546
  nfontrod authored 4 years ago
  
  804ef546
- src/download_encode_eclip/config.py: add a parameter merged_output · 4cd1a60e
  nfontrod authored 4 years ago
  
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- src/figures_utils/config_figures.py: add a parameter to get_good_project to... · 6a8961cf
  nfontrod authored 4 years ago
  6a8961cf
- src/download_encode_eclip/get_encode_clips.py: modifications to be hable to... · 3d24accb
  nfontrod authored 4 years ago
  3d24accb
Jan 27, 2021
- src/find_interaction_cluster/__main__.py... · 98ba7455
  nfontrod authored 4 years ago
  98ba7455
- src/find_interaction_cluster/community_calibration.py: creation of input and... · 4a363356
  nfontrod authored 4 years ago
  4a363356
- src/find_interaction_cluster/clip_figures/__main__.py... · cc536f0b
  nfontrod authored 4 years ago
  cc536f0b
- src/find_interaction_cluster/__main__.py: add inflation parameter · 0b1767bd
  nfontrod authored 4 years ago
  
  0b1767bd
- src/find_interaction_cluster/community_finder.py: add inflation parameter to... · c97e4856
  nfontrod authored 4 years ago
  c97e4856
- src/nt_composition/__main__.py: add inflation parameter · df60bf2a
  nfontrod authored 4 years ago
  
  df60bf2a
- src/nt_composition/make_nt_correlation.py: add inflation parameter · d832cda5
  nfontrod authored 4 years ago
  
  d832cda5
- src/find_interaction_cluster/*.py: add a parameter inflation in... · cc520e2a
  nfontrod authored 4 years ago
  cc520e2a
- src/find_interaction_cluster/community_calibration.py: create a script to see... · 34593609
  nfontrod authored 4 years ago
  34593609
- src/find_interaction_cluster/community_finder.py: fix create_graph to use... · 61dcf23f
  nfontrod authored 4 years ago
  61dcf23f
- src/find_interaction_cluster/config.py: add new variable community_calibration_folder · 0f6dce74
  nfontrod authored 4 years ago
  
  0f6dce74
Jan 25, 2021
- src/find_interaction_cluster/clip_figures/clip_analyser.py: change in... · 6e73fade
  nfontrod authored 4 years ago
  6e73fade
- src/download_encode_eclip/*.py: creation of a module used to download all the... · f826d8d6
  nfontrod authored 4 years ago
  f826d8d6
Jan 22, 2021
- src/misc/: script that creates a table indicating the number of splicing lore,... · 8cbc86a4
  nfontrod authored 4 years ago
  8cbc86a4
Jan 21, 2021
- src/find_interaction_cluster/community_figures/fig_functions.py: change in... · b3e0d1a0
  nfontrod authored 4 years ago
  b3e0d1a0
- src/find_interaction_cluster/community_figures/fig_functions.py: fix make_barplot call · cc0654d5
  nfontrod authored 4 years ago
  
  cc0654d5
- src/find_interaction_cluster/community_figures/__main__.py: add logit in docstring · 94cc4d51
  nfontrod authored 4 years ago
  
  94cc4d51
Jan 20, 2021
- src/find_interaction_cluster/community_figures/fig_functions.py: change de... · eadf270f
  nfontrod authored 4 years ago
  eadf270f
- src/find_interaction_cluster/clip_figures/clip_analyser.py: deletion of... · 7cf05207
  nfontrod authored 4 years ago
  7cf05207
- src/find_interaction_cluster/community_figures/fig_functions.py: handles... · 224fc9d0
  nfontrod authored 4 years ago
  224fc9d0
- src/find_interaction_cluster/clip_figures/__main__.py: add sl_reg parameter · 39e627ae
  nfontrod authored 4 years ago
  
  39e627ae
- src/find_interaction_cluster/clip_figures/clip_analyser.py: add sl_reg parameter · c06baf31
  nfontrod authored 4 years ago
  
  c06baf31
Jan 19, 2021
- src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: fix... · 0effc7d1
  nfontrod authored 4 years ago
  0effc7d1
- src/find_interaction_cluster/clip_figures/clip_compo_*.py: add a parameter display_size · b7c8f6cd
  nfontrod authored 4 years ago
  
  b7c8f6cd
- src/find_interaction_cluster/clip_figures/__main__.py: add 3 new parameters:... · 8e2676a1
  nfontrod authored 4 years ago
  8e2676a1
- src/find_interaction_cluster/clip_figures/clip_analyser.py: add 3 new... · a99a462f
  nfontrod authored 4 years ago
  a99a462f
- src/find_interaction_cluster/nt_and_community.py: fix create_outfiles function · 4a9ae1f4
  nfontrod authored 4 years ago
  
  4a9ae1f4
- src/find_interaction_cluster/__main__.py: add display_size parameter · 1bb5612d
  nfontrod authored 4 years ago
  
  1bb5612d
- src/find_interaction_cluster/nt_and_community.py: add 2 new parameters to... · d8c9d672
  nfontrod authored 4 years ago
  d8c9d672
- src/find_interaction_cluster/community_finder.py: call get_community -> get_communities_basefile · 3edbe8a3
  nfontrod authored 4 years ago
  
  3edbe8a3