Merge branch 'master' of gitlab_lbmc:LBMC/regards/chia-pet_network into dev

requirements.txt

@@ -5,3 +5,5 @@ numpy
 regex==2020.2.20
 lazyparser==0.2.0
 coloredlogs==10.0
+seaborn
+matplotlib
\ No newline at end of file

src/figures_utils/__main__.py

@@ -9,6 +9,9 @@ expected
 """
 
 from . exons_interactions import launch_figures_creation
+from . exons_interactions import get_info_from_database
+import sqlite3
+from .config_figures import Config
 
 
 def launcher():
@@ -17,7 +20,13 @@ def launcher():
     regulated by a splicing factor are more often co-localized than randomly \
     expected
     """
-    launch_figures_creation()
+    list_sf = get_info_from_database(sqlite3.connect(Config.db_file),
+                                     """SELECT sf_name
+                                        FROM cin_project_splicing_lore""")
+    list_sf = list(set(list_sf))
+
+    for sf in list_sf:
+        launch_figures_creation(sf)
 
 
 launcher()

src/figures_utils/config_figures.py

@@ -15,4 +15,10 @@ class Config:
     A class containing every parameters used in the submodule figures_utils
     """
     results = Path(__file__).parents[2] / "results"
+    figures_all_chia_pet_datasets = results / "figures_all_chia_pet_datasets"
+    figures_all_chia_pet_datasets_2 = results / "figures_all_chia_pet_" \
+                                                "datasets_after_filtering"
+    figures_by_chia_pet_dataset = results / "figures_by_chia_pet_dataset"
     db_file = results / 'chia_pet_database.db'
+    draw_number = 1000
+    file_datasets_filtering = results / "projects_filtering.txt"