Skip to content
Snippets Groups Projects
Select Git revision
  • master default protected
  • dev
2 results
Blame Permalink
config.py 1.09 KiB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42 






#!/usr/bin/env python3

# -*- coding: UTF-8 -*-

"""
Description: A class containing all the variables used in this submodule
"""

from pathlib import Path


class OutputBed:
    """
    A class containing the location of output bed files
    """
    output = Path(__file__).parents[2] / "results" / "bed_file"
    filtered_gene = output / "filtered_gene.bed"
    body_gene = output / "body_gene.bed"
    tss_gene = output / "tss_gene.bed"
    tts_gene = output / "tts_gene.bed"
    after_gene = output / "after_gene.bed"


class BedConfig:
    """
    A class containing all the variables used in this submodule
    """
    base = Path(__file__).parents[2]
    ddx_genes = base / "data" / "DDX5_17_genes.txt"
    gene_bed = base / "data" / "bed" / "gene.bed"
    exon_bed = base / "data" / "bed" / "exon.bed"
    bed = OutputBed
    size = 5000


class TestConfig:
    """Contains variable used in docstring tests"""
    base = Path(__file__).parents[2] / "tests" / "files"
    list_genes = base / "list_genes.txt"
    gene_bed = base / "genes.bed"
    exon_bed = base / "exons.bed"
    small_bw = base / "small.bw"