Change caps name, and queue size

src/hiclassifier/classify.py

@@ -11,7 +11,7 @@ from .bam import read_bam_pair
 from .digest import build_restriction_index_from_records
 from .processing import process_items
 from .processmanager import ProcessManager
-from .restrictionsite import SearchInDataBase
+from .restrictionsite import search_in_database
 from .stats import compact_and_save_counts
 from .writer import write_bam_pair
 
@@ -36,7 +36,7 @@ def categorize(args, logging):
     len_max = args.len_max
     tolerance = int(args.tolerance)
 
-    ligation_site_list, restriction_site_list = SearchInDataBase(enzyme)
+    ligation_site_list, restriction_site_list = search_in_database(enzyme)
     if restriction_site_list is None:
         logging.error("Ligation site list is empty.")
         sys.exit(0)
@@ -52,16 +52,16 @@ def categorize(args, logging):
         logging.error("BAM's file does not exist.")
         sys.exit()
 
-    Input_Queue = Queue(1000)
     Header_Queue = Queue()
-    Output_Queue_Valide = Queue()
-    Output_Queue_Other = Queue()
+    Input_Queue = Queue(1000)
+    Output_Queue_Valide = Queue(1000)
+    Output_Queue_Other = Queue(1000)
+    Output_Queue_Del = Queue(1000)
     Counts_Dang_Intra_Queue = Queue()
     Counts_Biot_Intra_Queue = Queue()
     Counts_Dang_Inter_Queue = Queue()
     Counts_Biot_Inter_Queue = Queue()
     Counts_Undigested_Site_Queue = Queue()
-    Output_Queue_Del = Queue()
     write_processes, compute_processes, reading_process = partitionning(
         num_threads
     )