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Created with Raphaël 2.2.017Feb15104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Mar28272625222120137654120Feb15107521Dec2019141326Oct242316121110986543226Sep2524201817141331Aug292724232221231Jul3027262524231312327Jun2019nextflow.config: simplify errorStrategy for computing gridnextflow.config: change errorStrategygatk3: add new processesgatk3: fix variant callingsamtools: modify output name of merge_multi_bamsamtools: add process to merge multiple bamfix bwa indexingtypo in gatk3 to DSL2add gatk3 to DSL2update picard samtools and bwa for DSL2fix fix g2gtools 0.2.8nf_modules: add ucsc bg to bw fix outputnf_modules: add ucsc bg to bw sorting stepnf_modules: add ucsc bg to bwdocker: add deeptools 3.5.0solution_RNASeq.nf: update command to launch pipenextfow.config: update base default versiondocker: add ucsc:407nf_modules: add bam to bedgraph and change deeptools versionnf_module: remove publishDir instructionfastqc: main.nf cleanup codesamtools: main.nf clarify bam_index output1samtools: test for indexingnf_modules: update output tuple to handle list as file_idsamtools: change file_id to bam.simpleNamedocker: add samtools v1.11samtools: fix flagstats cmdsamtools: change label for bam_statssamtools: add bam_stats processnextflow.config: add memory limitspicard: fix uper memory limit to 30GBpicard: fix bams var in main.nfbedtools: add bam_id valsamtools: fix filter_bam_mappedbedtools: bam_to_fastq emits tuplebedtools: fix bam_to_fastq scriptbedtools: fix tagssamtools: fix catched bams namessamtools: fix samtools versionbedtools: fix output value name for bam_to_fastq_pairedend