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Created with Raphaël 2.2.019May129628Apr1422Mar147128Feb246Jan30Nov226Oct25212019181514121187654130Sep29242321124Aug23201918171623Jul22211915139875230Jun29282422211716942131May28262521201817121110765329Apr28272622212019161514138225Mar22171615121110985225Feb242220181715104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec96Merge: 88f47c9 (nanopipe/master)src/in2p3.pbs : remove unnessary variableworking config and daemon job for in2p3nextflow.config: change ccin2p3 to slurmgffread: don't delete original gzMerge: 23ddf03 (nanopipe/master)Close merge request #28htseq/1.99.2/Dockerfile: fix typo :2Merge crey02/nextflow-add_htseq to close #29src/nf_modules/gffread/main.nf: fix typo :58src/nf_modules/gffread/main.nf: fix typo :59gffread: fix typo :58gffread: unzip gtf for spliced_cds processgffread: unzip input fastapicard: add normalize_fasta processgffread: simplify extract cds processgffread: escape $ :61gffread: add spliced_cds processsrc/nf_modules/hisat2/main.nf: remove default parameterssrc/example_marseq.nf: update default cmd to v98 of genomehisat2: remove samtools reporthisat2: change report file namehisat2: change report file namebedtools: change bg file to bed filesrc/nf_modules/hisat2/main.nfdocker: sanity fix typoClose merge request #27hisat2: add main.nfDocker: add histat2 2.2.1Docker: add samtools 1.14Close merge request if [[ -z ]]; then ; echo test; fimultiqc: remove viewmultiqc: better handling of List as inputsamtools: add compatbility with mutlqcsamtools and picardtools: add compatibility with mutliqcsamtools: rename flagstat log for multiqcmutliqc: Dockerfile switch from debian to python imgmultiqc: update 1.9 -> 1.11multiqc: remove viewmutliqc.nf: fix flatten procedure