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Created with Raphaël 2.2.016Apr12929Mar28272625222120137654120Feb15107521Dec2019141326Oct242316121110986543226Sep2524201817141331Aug292724232221231Jul3027262524231312327Jun2019187654131May3025hisat2: add in2p3 configfastqc: add in2p3 configfastp: add in2p3 configdeeptools: add in2p3 configcutadapt: add in2p3 configbwa: add in2p3 configbowtie2: add in2p3 configbowtie: add in2p3 configbedtools: update in2p3 configkallisto: add in2p3 configadd .sh helpers for singularity on the ccin2p3change .sif to .img for singularity imgkallisto: fix singularity testskallisto: config for in2p3, add /usr/bin to pathkallisto: add verbose to indexing.nfkallisto: remove bash configkallisto: update in2p3 configkallisto: add info for in2p3 scratchkallisto: test of in2p3 config filekallisto: add singularity script for ccin2p3umi_tools: add singularity modulerm umitools modules to only keep umi_toolsumi_tools: add docker filescutadapt: add v2.1update module listupdate psmn moduleshisat2: add v2.1.0update psmn module and hisat2 configMerge branch 'nfontrod/nextflow-master' into devhisat2: add samtools to singularity moduleshisat2: add samtools to dockerhisat2: merge samtools and hisat2 in the processhisat2: update process and config to match new formathtseq: add v0.11.2update psmn_modulessrc/nf_modules/Hisat2/ -> src/nf_modules/hisat2/Merge branch 'master' of gitlab_lbmc:pipelines/nextflowmultiqc: add v1.7update changelog for 0.2.9v0.2.9v0.2.9update module list