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Created with Raphaël 2.2.04Jun2131May28262521201817121110765329Apr28272622212019161514138225Mar22171615121110985225Feb242220181715104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Mar282726252221201376cleanup DSL1 test.shswitcth to nextflow DSL2Docker: add emase 0.10.16v2.0.0v2.0.0example_marseq.nf: add log for config fileexample_marseq.nf: add vecloty examplekb: add velocity workflowexample_variant_calling.nf: fix fasta varfix typoexample_variant_calling.nf: fix typo :12gatk4: fix include pathgatk4: fix include pathfix emit: for named workflowadd example of variant calling with gatk4bwa: add mapping workflowgatk4: first version of new variant calling workflowemase-zero: remove collect() :20emaze: change input to follow change to t2g in kb main.nfexample_marseq.nf: add illumina adaptor removalworking example of marseq analysiskb: working marseq quantif pipelineemaze: change imput from gtf to fasta to compute transcript lengthalntools: separate transcript length computationgffread: add awk cmd to remove duplicated transcriptgffread: add -x and -M optiongffread: add -x optiongffread: add main.nfgffread: add version 0.12.2kb: change t2g.py to use classical transcript and gene gtf formatbowtie2: change file_id handlingkb: fix missing \ at end of lineskb: fix t2g.py to have first transcript and then genecutadapt: update output name and capturecutadapt: update to last contributing guide versionalntools: try fix for bam baikb: remove view()flexi_splitter: split computation per plateflexi_splitter: fix tag :25flexi_splitter: fixed group_fastq processalntools: remove chunck optionemase-zero: change bam to bam_idx