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LBMC
nextflow
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4ff7d5659f7ec1d955ec88b69bcbbdcea3f5d7d6
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master
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v2.0.0
v0.4.0
v0.3.0
v0.2.9
v0.2.8
v0.2.7
v0.2.6
v0.1.0
v0.2.5
v0.2.4
v0.2.3
v0.2.2
v0.2.1
v0.2.0
v0.1.2
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Created with Raphaël 2.2.0
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bwa: update to match CONTRIBUTING.md
bowtie: update to match CONTRIBUTING.md
fastp: update accel_s1plus protocol
samtools: update to follow CONTRIBUTING.md
bowtie2: replace pair_id by file_id
bowtie2: fix input tuple :45
bowtie2: update to match contributing.md
nf_modules: update module from g2gtools to multiqc to match the CONTRIBUTING.md
fastp: fix variable name in fastp_accel_1splus
mv PSMN singularity img to /Xnfs/abc/singularity/
CONTRIBUTING.md: end of the nf_modules section
fastp: update fastp to match CONTRIBUTING.md
kallisto: update script to match CONTRIBUTING.md
kallisto: fix warning in mapping_fastq about single-end parameters
CONTRIBUTING.md: start to rewrite new instruction with DSL2
update solution_RNASeq.nf to match CONTRIBUTING.md
bedtools: fix typo :19
kallisto: fix typo :15
bedtools: update to match CONTRIBUTING.md
kallisto: update file to match CONTRIBUTING.md
solution_RNASeq.nf: use generic process instead of _pairedend ones
kallisto: fix typo :47
cutadapt: fix typo :34
cutadapt: fix bug :28
README.md: add upstream mergin commands
nextflow.config: add small_mem label
rm old script from src/
change path for the shared singularity img at the ccin2p3
getting_started.md: update and add a profile section
fastp: add --interleaved_in for 2nd fastp for accel_s1plus
fastp: update accel_1splus protocol
fastp: add accel_1splus protocol trimming with a switch
nf_modules: add params.<process_names> for each process
bwa: add params.bwa
fastp: add params.fastp
Merge branch 'master' into 'master'
Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/nextflow
Docker: add alntools:dd96682
Docker: add emase-zero:0.3.1
Docker: add pandoc 2.11
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