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Created with Raphaël 2.2.013Apr8225Mar22171615121110985225Feb242220181715104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Mar28272625222120137654120Feb15107521Dec2019141326Oct242316121110986543226Sep25solution_RNASeq.nf: use generic process instead of _pairedend oneskallisto: fix typo :47cutadapt: fix typo :34cutadapt: fix bug :28README.md: add upstream mergin commandsnextflow.config: add small_mem labelrm old script from src/change path for the shared singularity img at the ccin2p3getting_started.md: update and add a profile sectionfastp: add --interleaved_in for 2nd fastp for accel_s1plusfastp: update accel_1splus protocolfastp: add accel_1splus protocol trimming with a switchnf_modules: add params.<process_names> for each processbwa: add params.bwafastp: add params.fastpMerge branch 'master' into 'master'Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/nextflowDocker: add alntools:dd96682Docker: add emase-zero:0.3.1Docker: add pandoc 2.11g2gtools: fix typo :13g2gtools: fix typo : 13g2gtools: remove .gz from fa.gzg2gtools: fix typo :47g2gtools: rename fasta output to fa.gzg2gtools: pass along tbi fileg2gtools: change output name of vcf2vcig2gtools: fix vci_build commandsamtools: fix input for multiqc processsamtools: fix output for multiqc processsamtools: add process to rename files for multiqcnexflow.config: rm sratch config for psmng2gtools: simpler file_id structureg2gtools: caputre stdout sent to stderr...g2gtools: capture stdout sent to stderrg2gtools: change file_id formatgatk4: fix gvcf_genotyping variable :199gatk4: change output to avoid using file_id var as it can be a dictminimap2: add main.nfDocker: add minimap2:2.17