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Created with Raphaël 2.2.025Mar247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Mar28272625222120137654120Feb15107521Dec2019141326Oct242316121110986543226Sep2524201817141331Aug292724232221231Jul3027262524231312327Jun2019187654131May3025conda_packages.sh: add bwa 0.7.17Docker: gatk3 fix arguments parsingDockerfile: gatk3 add gatk3 executable scriptMerge branch 'elabaron/nextflow-master' into devkallisto indexing.config: fix typoadd RNASeq.configcreate RNASeq.nffasta_sampler.nf: variable output nameMerge branch 'master' of gitlab_lbmc:pipelines/nextflowTP_experimental_biologists.md fix url typoget sample resultscreate fasta_sampler.nfMerge branch 'master' of gitlab_lbmc:pipelines/nextflowupdate mail messageumi_tools: Dockerfile, fix dependencesTP_experimental_biologists.md: add login informationcutadapt: config change version from 2.1 to 2.4fasta_from_bed.config: remove ${CONDA_ENVS}update TP_experimental_biologists.md with pipe 0.4.0Merge branch 'master' of gitlab_lbmc:pipelines/nextflowupdate mail.txtpsmn: fix gatk3.8.0 env namedocker: gatk3 fix licence problemMERGEconda: add psmn linksconda_packages.sh: add gatk4docker_modules: add gatk3.8.0training_dataset.config: remove mail alert from ccin2p3in2p3.pbs: fix work for nftraining_dataset.config: add mail reportsingularity in2p3: fix symlinktraining_dataset.config: final fix for in2p3 cacheDirin2p3.pbs: fix files path.update_config.sh: fix singularity cacheDir path for in2p3*.config: fix singularity cacheDir path for in2p3training_dataset.config: fix cacheDir for singularity in2p3in2p3.pbs: update pbs to use training_dataset.nfin2p3.pbs: update nextflow vertion to 19.10training_dataset.config: add ccin2p3 section.update_config.sh: exclude nf module from singularity update