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Created with Raphaël 2.2.019Aug18171623Jul22211915139875230Jun29282422211716942131May28262521201817121110765329Apr28272622212019161514138225Mar22171615121110985225Feb242220181715104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Maremase-zero: use g2tr instean of tr2gkb: add g2t processemase-zero: change ${bin} argumentgatk4: add samtools bam indexalntools: fix tsv output :20Merge branch 'crey02-master-patch-25149' into 'master'alntools: redirect stderr to report filekb: t2g tools work and gz and plain filemacs2: set default qvalue to 0.99kb: create a correction step for the t2g.txt messed with by kbkb: add clean t2g script in count processeskb: change sort option for t2gkb: create a backup of t2g.txt as kb rewrite itkb: remove gffutils buggy dependency for t2g.txt constructionkb: go back to working 0.26.0 versionkb: add libcurl to dockerfilegffread: remove empty linekb: update to 0.26.3t2g.py: fool proof output formatbedtools: add v2.30.0kb: enable infer tr and gn in t2g.pykb: fix cardinality for split() stept2g.py: fix indentationmlepetit/nextflow-Maximefix typo in *.mdfix typo in .md fileskb: change --lamano option into --workflow lamanobioawk: fix fasta2transcriptslength processkb: fix missing line :330gatk4: rename _out option for gvcfgatk4: add gvcf to variant_calling_outdocker: add htseq 0.13.5gatk4: change file_prefix definition to handle Mapgatk4: remove map only usefull for testingexample_variant_calling.nf: fix input channelgatk4: working variant calling pipelineexample_marseq.nf: cosmetic changesdeeptools: fix docker file for 3.5.1deeptools: add libcurl3 dependencymutliqc: add flatten step