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Oct 19, 2022
- update licencing informations · 29a44149
  Laurent Modolo authored 2 years ago
  
  29a44149
Feb 28, 2022
- bedtools: change bg file to bed file · 30bc832d
  Laurent Modolo authored 3 years ago
  
  30bc832d
Jun 04, 2021
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
  cc2d49f6
Apr 14, 2021
- samtools: update to follow CONTRIBUTING.md · 84daa858
  Laurent Modolo authored 3 years ago
  
  84daa858
Apr 13, 2021
- bedtools: fix typo :19 · bc81c837
  Laurent Modolo authored 3 years ago
  
  bc81c837
- bedtools: update to match CONTRIBUTING.md · 699cd563
  Laurent Modolo authored 3 years ago
  
  699cd563
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 3 years ago
  
  4a7355a2
Feb 18, 2021
- bedtools: add merge_bed process · 9ec0803c
  Laurent Modolo authored 4 years ago
  
  9ec0803c
Feb 04, 2021
- nf_modules: add bam to bedgraph and change deeptools version · ef37d983
  Laurent Modolo authored 4 years ago
  
  ef37d983
Feb 03, 2021
- nf_module: remove publishDir instruction · ed7fec13
  Laurent Modolo authored 4 years ago
  
  ed7fec13
Jan 29, 2021
- nf_modules: update output tuple to handle list as file_id · 28a831bf
  Laurent Modolo authored 4 years ago
  
  28a831bf
Jan 25, 2021
- bedtools: add bam_id val · 9cc39469
  Laurent Modolo authored 4 years ago
  
  9cc39469
- bedtools: bam_to_fastq emits tuple · 30d17edc
  Laurent Modolo authored 4 years ago
  
  30d17edc
- bedtools: fix bam_to_fastq script · 8338d66f
  Laurent Modolo authored 4 years ago
  
  8338d66f
- bedtools: fix tags · 5d11f90e
  Laurent Modolo authored 4 years ago
  
  5d11f90e
- bedtools: fix output value name for bam_to_fastq_pairedend · 2e62b247
  Laurent Modolo authored 4 years ago
  
  2e62b247
- bedtools: change bam_to_fastq_pairedend name to be more consistant · 41651a7a
  Laurent Modolo authored 4 years ago
  
  41651a7a
- fix input and output for bedtools and samtools · 8bebb4a1
  Laurent Modolo authored 4 years ago
  
  8bebb4a1
- bedtools: add bam to fastq convertion · 70c7d906
  Laurent Modolo authored 4 years ago
  
  70c7d906
Jan 20, 2021
- nf_modules: add bedtools for DSL2 · b1f4bf87
  Laurent Modolo authored 4 years ago
  
  b1f4bf87
Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
  5cdad1d7
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Dec 13, 2019
- fasta_from_bed.config: remove ${CONDA_ENVS} · 05e1de4c
  Laurent Modolo authored 5 years ago
  
  05e1de4c
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  78189351
May 17, 2019
- config files: updater monocore queues for psmn · 21a8f8b8
  Laurent Modolo authored 5 years ago
  
  21a8f8b8