Commits · f2f617c5518479021a7a6aaebc05282c0ea05c1c · LBMC / nextflow

Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  78189351
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
  99eb8705
Apr 16, 2019
- samblaster: add in2p3 config · 7505299c
  Laurent Modolo authored 5 years ago
  
  7505299c
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  a972f993
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
  016b5b22
Mar 13, 2019
- samblaster: fix test.sh · 666c81d1
  Laurent Modolo authored 6 years ago
  
  666c81d1
Mar 06, 2019
- nf_modules: add singularity in config files and tests.sh · f720ba52
  Laurent Modolo authored 6 years ago
  
  f720ba52
- cutadapt: add singularity to nf files and add -resume to all tests.sh · 60040ed6
  Laurent Modolo authored 6 years ago
  
  60040ed6
Dec 20, 2018
- SAMtools: Dockerfile ubuntu -> alpine · 86ff02d6
  Laurent Modolo authored 6 years ago
  
  86ff02d6
Dec 19, 2018
- nf_modules: fix withname -> withName in config files · 85a68216
  Laurent Modolo authored 6 years ago
  
  85a68216
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  e057e9a1
Oct 23, 2018
- samblaster: nf update psmn config · eb58b93f
  Laurent Modolo authored 6 years ago
  
  eb58b93f
- nf config file update nf syntax for process · 3e2c83f3
  Laurent Modolo authored 6 years ago
  
  3e2c83f3
- nf config: rename sge to psmn · fa486dc6
  Laurent Modolo authored 6 years ago
  
  fa486dc6
Sep 17, 2018
- samblaster: add nf files · 05dfb3b0
  Laurent Modolo authored 6 years ago
  
  05dfb3b0