Commits · ed7fec139bf6cd614b730fcd3e0cdf9807106548 · LBMC / nextflow

Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
  5cdad1d7
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  78189351
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
  99eb8705
Apr 16, 2019
- urqt: add in2p3 config · 950bd41f
  Laurent Modolo authored 5 years ago
  
  950bd41f
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  a972f993
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
  016b5b22
Mar 06, 2019
- nf_modules: update config files to match psmn lowercase module names · 80b5c871
  Laurent Modolo authored 6 years ago
  
  80b5c871
Mar 04, 2019
- fastqc: add singularity to nf files · c55f3be5
  Laurent Modolo authored 6 years ago
  
  c55f3be5
- rename module to lowercase · 231fd9e6
  Laurent Modolo authored 6 years ago
  
  v0.2.8
  
  231fd9e6
Mar 01, 2019
- UrQt: update singularity path · 1bba0da1
  Laurent Modolo authored 6 years ago
  
  1bba0da1
- UrQt: switch cpus config from .nf to .config · c8902c46
  Laurent Modolo authored 6 years ago
  
  c8902c46
- UrQt: add singularity config and test · 2901dd9f
  Laurent Modolo authored 6 years ago
  
  2901dd9f
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  e057e9a1
Oct 23, 2018
- nf module: update executor from psmn to sge · 9fdc0424
  Laurent Modolo authored 6 years ago
  
  9fdc0424
- nf config: rename sge to psmn · fa486dc6
  Laurent Modolo authored 6 years ago
  
  fa486dc6
- UrQt: update nf config file for the PSMN · e8805ca1
  Laurent Modolo authored 6 years ago
  
  e8805ca1
Aug 22, 2018
- UrQt: update nf structure · 12e1d05a
  Laurent Modolo authored 6 years ago
  
  12e1d05a
Jun 06, 2018
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  3454e1e8
Jun 05, 2018
- mv nf files to nf_modules · 705226a9
  Laurent Modolo authored 6 years ago
  
  705226a9
- correctly mv nf_modules · 4fa9a1b1
  Laurent Modolo authored 6 years ago
  
  4fa9a1b1
- mv nf_modules to docker_modules · f51bf1e4
  Laurent Modolo authored 6 years ago
  
  f51bf1e4
Jun 04, 2018
- fix docker configuration · b0a4d2c1
  Laurent Modolo authored 6 years ago
  
  b0a4d2c1
Jun 01, 2018
- UrQt: add tests, nf and config · 86a16ba6
  Laurent Modolo authored 6 years ago
  
  86a16ba6