Commits · ceca3ce0513a67370ce258f6b1d2f827cc04329b · LBMC / nextflow · GitLab

Snippets Groups Projects

Oct 19, 2022
- update licencing informations · 29a44149
  Laurent Modolo authored 2 years ago
  
  29a44149
Jun 04, 2021
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
  cc2d49f6
Apr 16, 2021
- nf_modules: fix paired-single end handling · 481dc0d4
  Laurent Modolo authored 3 years ago
  
  481dc0d4
Apr 14, 2021
- bowtie: update to match CONTRIBUTING.md · b867bf9a
  Laurent Modolo authored 3 years ago
  
  b867bf9a
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 3 years ago
  
  4a7355a2
Mar 12, 2021
- add paired_end and single_end switch version to all implementations · e4d5b19b
  Laurent Modolo authored 4 years ago
  
  e4d5b19b
Feb 03, 2021
- nf_module: remove publishDir instruction · ed7fec13
  Laurent Modolo authored 4 years ago
  
  ed7fec13
Jan 22, 2021
- nf_modules: add bowtie to DSL2 · 829ff319
  Laurent Modolo authored 4 years ago
  
  829ff319
Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
  5cdad1d7
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- nf_modules: bowtie fixe conda path · 9ec1ade8
  Laurent Modolo authored 5 years ago
  
  9ec1ade8
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
Jun 07, 2019
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored 5 years ago
  
  78cf7e3c
- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored 5 years ago
  
  44e1391d
- bowtie: nf, only keep 15 last lines of report · 92f8f605
  Laurent Modolo authored 5 years ago
  
  92f8f605
- bowtie2: nf, only keep last 15 lines of report · 0977ef07
  Laurent Modolo authored 5 years ago
  
  0977ef07
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  78189351
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
  99eb8705
Apr 16, 2019
- bowtie: add in2p3 config · 7fc46b3c
  Laurent Modolo authored 5 years ago
  
  7fc46b3c
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  a972f993
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
  016b5b22
Mar 06, 2019
- cutadapt: add singularity to nf files and add -resume to all tests.sh · 60040ed6
  Laurent Modolo authored 6 years ago
  
  60040ed6
- nf_modules: update config files to match psmn lowercase module names · 80b5c871
  Laurent Modolo authored 6 years ago
  
  80b5c871
Mar 04, 2019
- update link for all modules names to lowercase · 9b037d38
  Laurent Modolo authored 6 years ago
  
  9b037d38
- rename module to lowercase · 231fd9e6
  Laurent Modolo authored 6 years ago
  
  v0.2.8
  
  231fd9e6