Commits · bb06add81aebf53c1d27f9298f340dba9d4a4989 · LBMC / nextflow · GitLab

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Jun 29, 2020
- nf_modules: fix cutadapt version · bb06add8
  Laurent Modolo authored 4 years ago
  
  bb06add8
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 5 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 5 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 5 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 5 years ago
  
  c116038b
Jan 17, 2020
- kallisto indexing.config: fix typo · 195e5ce1
  Laurent Modolo authored 5 years ago
  
  195e5ce1
Dec 13, 2019
- cutadapt: config change version from 2.1 to 2.4 · 2b14934b
  Laurent Modolo authored 5 years ago
  
  2b14934b
- fasta_from_bed.config: remove ${CONDA_ENVS} · 05e1de4c
  Laurent Modolo authored 5 years ago
  
  05e1de4c
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 20, 2019
- nf_modules: add STAR · 4ff7d565
  Laurent Modolo authored 5 years ago
  
  4ff7d565
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- nf_modules: bowtie fixe conda path · 9ec1ade8
  Laurent Modolo authored 5 years ago
  
  9ec1ade8
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
Jul 18, 2019
- fastqdump.nf: force tmp file to be in the right place · 01dac1f9
  Laurent Modolo authored 5 years ago
  
  01dac1f9
Jun 07, 2019
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored 5 years ago
  
  78cf7e3c
- htseq: fix singularity config · da3831bb
  Laurent Modolo authored 5 years ago
  
  da3831bb
- subread nf: add nf config and test files · f92cde7c
  Laurent Modolo authored 5 years ago
  
  f92cde7c
- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored 5 years ago
  
  44e1391d
- bowtie: nf, only keep 15 last lines of report · 92f8f605
  Laurent Modolo authored 5 years ago
  
  92f8f605
- bowtie2: nf, only keep last 15 lines of report · 0977ef07
  Laurent Modolo authored 5 years ago
  
  0977ef07
May 28, 2019
- fastqdump: fix singularity image name · e491cdc7
  Laurent Modolo authored 5 years ago
  
  e491cdc7
- multiqc: add missing singulairy test · 6a330a3a
  Laurent Modolo authored 5 years ago
  
  6a330a3a
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  78189351
- in2p3 test: make singularity default for ccin2p3 · 09e2b2fc
  Laurent Modolo authored 5 years ago
  
  09e2b2fc
- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 5 years ago
  
  883c3c3e
- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 5 years ago
  
  0f3a7c43
- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 5 years ago
  
  f6921da8
- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 5 years ago
  
  b6101c65
- in2p3: test singularity automount · 854a1709
  Laurent Modolo authored 5 years ago
  
  854a1709
- in2p3 singularity: fix logs path · 9e61e551
  Laurent Modolo authored 5 years ago
  
  9e61e551
- test in2p3: add more details in mail report · b7d9581d
  Laurent Modolo authored 5 years ago
  
  b7d9581d
- singularity test at in2p3 · 803af8b7
  Laurent Modolo authored 5 years ago
  
  803af8b7