Commits · 94a24ded694e0bf8a8890d6a262e99cb9a97f884 · LBMC / nextflow · GitLab

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Nov 22, 2019
- src/ cleanup .pbs example · 94a24ded
  Laurent Modolo authored Nov 22, 2019
  
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  94a24ded
Nov 20, 2019
- docker: fix ucsc img · 2835b4b2
  Laurent Modolo authored Nov 20, 2019
  
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  2835b4b2
- psmn: add axtchain_377 · a555e942
  Laurent Modolo authored Nov 20, 2019
  
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  a555e942
- psmn: add liftover_357 · 5615c454
  Laurent Modolo authored Nov 20, 2019
  
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  5615c454
- singularity: remove module as they are pulled from docker since 0.4.0 · e4c29f64
  Laurent Modolo authored Nov 20, 2019
  
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  e4c29f64
- docker: add liftover:357 · 4184614b
  Laurent Modolo authored Nov 20, 2019
  
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  4184614b
- docker: change FROM url to add lbmc/ prefix · aa85921f
  Laurent Modolo authored Nov 20, 2019
  
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  aa85921f
- docker: change FROM url to add lbmc/ prefix · 81768be1
  Laurent Modolo authored Nov 20, 2019
  
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  81768be1
- update docker script for v0.4.0 to automatise push · 7064340c
  Laurent Modolo authored Nov 20, 2019
  
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  7064340c
- update docker script for v0.4.0 · 28cb6941
  Laurent Modolo authored Nov 20, 2019
  
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  28cb6941
- docker_files: fix sambamba · c2fad6c0
  Laurent Modolo authored Nov 20, 2019
  
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  c2fad6c0
- README.md: increave visibility for 0.4.0 transition · d0eb0a93
  Laurent Modolo authored Nov 20, 2019
  
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  d0eb0a93
- nf_modules: add STAR · 4ff7d565
  Laurent Modolo authored Nov 20, 2019
  
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  4ff7d565
- update docker script for v0.4.0 · a037caea
  Laurent Modolo authored Nov 20, 2019
  
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  a037caea
- docker_files: add star · b6f00cb0
  Laurent Modolo authored Nov 20, 2019
  
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  b6f00cb0
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored Nov 18, 2019
  
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  4734f32a
Nov 05, 2019
- README.md: update list of projects · c771caa4
  Laurent Modolo authored Nov 5, 2019
  
  View commits for tag v0.4.0 v0.4.0 Unverified
  
  c771caa4
- README.md: add list of nextflow projects · c8fc7774
  Laurent Modolo authored Nov 5, 2019
  
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  c8fc7774
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 14be919e
  Laurent Modolo authored Nov 5, 2019
  
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  14be919e
- README.md: put list of available tools in another file · fe986dbe
  Laurent Modolo authored Nov 5, 2019
  
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  fe986dbe
- Docker: umi_tools: fix dependecies list · 1edb0ebd
  Laurent Modolo authored Nov 5, 2019
  
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  1edb0ebd
- README.md: mv getting started in a new file · 6fd6cf2f
  Laurent Modolo authored Nov 5, 2019
  
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  6fd6cf2f
Oct 18, 2019
- add mail for tp · a3fd2716
  Laurent Modolo authored Oct 18, 2019
  
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  a3fd2716
Jul 18, 2019
- fastqdump.nf: force tmp file to be in the right place · 01dac1f9
  Laurent Modolo authored Jul 18, 2019
  
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  01dac1f9
Jun 12, 2019
- test of static website · 59dbabfe
  Laurent Modolo authored Jun 12, 2019
  
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  59dbabfe
Jun 11, 2019
- fastp singularity: fix sps and pbs path · 155268f9
  Laurent Modolo authored Jun 11, 2019
  
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  155268f9
- subread singularity: fix sps and pbs path · b3aee972
  Laurent Modolo authored Jun 11, 2019
  
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  b3aee972
Jun 07, 2019
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored Jun 7, 2019
  
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  78cf7e3c
- htseq: fix singularity config · da3831bb
  Laurent Modolo authored Jun 7, 2019
  
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  da3831bb
- subread nf: add nf config and test files · f92cde7c
  Laurent Modolo authored Jun 7, 2019
  
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  f92cde7c
- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored Jun 7, 2019
  
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  44e1391d
- bowtie: nf, only keep 15 last lines of report · 92f8f605
  Laurent Modolo authored Jun 7, 2019
  
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  92f8f605
- bowtie2: nf, only keep last 15 lines of report · 0977ef07
  Laurent Modolo authored Jun 7, 2019
  
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  0977ef07
Jun 04, 2019
- nextflow.pbs: change dag from pdf to html · b2d7e719
  Laurent Modolo authored Jun 4, 2019
  
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  b2d7e719
- nextflow.pbs: change position of NF option to facilitate bug tracking · 787e9c42
  Laurent Modolo authored Jun 4, 2019
  
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  787e9c42
May 29, 2019
- Docker modules: add "ps" to debian img · b5141d92
  Laurent Modolo authored May 29, 2019
  
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  b5141d92
May 28, 2019
- fastqdump: fix singularity image name · e491cdc7
  Laurent Modolo authored May 28, 2019
  
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  e491cdc7
- multiqc: singularity fix env variable problem · 3c7e5740
  Laurent Modolo authored May 28, 2019
  
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  3c7e5740
- multiqc: add missing singulairy test · 6a330a3a
  Laurent Modolo authored May 28, 2019
  
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  6a330a3a
May 23, 2019
- CHANGELOG: add v0.3.0 · d72cbbf1
  Laurent Modolo authored May 23, 2019
  
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  d72cbbf1