Commits · 8d92ac19a1af62d6a5234721ad976af92aecbabe · LBMC / nextflow

Jun 09, 2021
- deeptools: fix docker file for 3.5.1 · 8d92ac19
  Laurent Modolo authored 3 years ago
  
  8d92ac19
Jun 04, 2021
- deeptools: add libcurl3 dependency · 414cc8b9
  Laurent Modolo authored 3 years ago
  
  414cc8b9
Jun 02, 2021
- Docker: add emase 0.10.16 · 6614fc01
  Laurent Modolo authored 3 years ago
  
  v2.0.0
  
  6614fc01
May 20, 2021
- gffread: add version 0.12.2 · 9eb61947
  Laurent Modolo authored 3 years ago
  
  9eb61947
May 18, 2021
- kb: change t2g.py to use classical transcript and gene gtf format · bd5b4ace
  Laurent Modolo authored 3 years ago
  
  bd5b4ace
May 12, 2021
- kb: fix t2g.py to have first transcript and then gene · fdb6eac6
  Laurent Modolo authored 3 years ago
  
  fdb6eac6
May 06, 2021
- alntools: add six module · 03d1b183
  Laurent Modolo authored 3 years ago
  
  03d1b183
May 05, 2021
- alntools: add gawk to docker · 778f3cdc
  Laurent Modolo authored 3 years ago
  
  778f3cdc
Apr 29, 2021
- kb: add transcript to gene script to Docker · 6efd55d6
  Laurent Modolo authored 3 years ago
  
  6efd55d6
Apr 28, 2021
- kb: add ps to Dockerfile · c97a2a20
  Laurent Modolo authored 3 years ago
  
  c97a2a20
Apr 27, 2021
- Docker: add flexi_splitter 1.0.2 · 6adf0f27
  Laurent Modolo authored 3 years ago
  
  6adf0f27
- deeptools: update to v3.5.1 · 15ba0f1c
  Laurent Modolo authored 3 years ago
  
  15ba0f1c
- deeptools: add ps to Dockerfile · 421ac4d4
  Laurent Modolo authored 3 years ago
  
  421ac4d4
Apr 26, 2021
- kallisto: fix singleend reads table · 8fc16bd7
  Laurent Modolo authored 3 years ago
  
  8fc16bd7
Mar 25, 2021
- Docker: add alntools:dd96682 · a83195d8
  Laurent Modolo authored 4 years ago
  
  a83195d8
- Docker: add emase-zero:0.3.1 · 3888c6a4
  Laurent Modolo authored 4 years ago
  
  3888c6a4
Mar 22, 2021
- Docker: add pandoc 2.11 · 5f4f434b
  Laurent Modolo authored 4 years ago
  
  5f4f434b
Mar 15, 2021
- Docker: add minimap2:2.17 · 364632ef
  Laurent Modolo authored 4 years ago
  
  364632ef
Mar 12, 2021
- Docker: add star 2.5.3 · e66e20ab
  Laurent Modolo authored 4 years ago
  
  e66e20ab
- Docker: g2gtools, add procps for nextflow · 8ea08355
  Laurent Modolo authored 4 years ago
  
  8ea08355
- Docker: fix g2gtools dependencies · bc5cc99e
  Laurent Modolo authored 4 years ago
  
  bc5cc99e
- Docker: g2gtools add pysam dependency · 308f6c25
  Laurent Modolo authored 4 years ago
  
  308f6c25
Mar 08, 2021
- docker: add r 4.0.3 · ead3fe96
  Laurent Modolo authored 4 years ago
  
  ead3fe96
Feb 20, 2021
- docker: bwa replace sambamba with samtools · ec1d8657
  Laurent Modolo authored 4 years ago
  
  ec1d8657
- bwa: replace sambamba by sambools · 0e7adae3
  Laurent Modolo authored 4 years ago
  
  0e7adae3
- docker: bwa fix sambamba rights · 618c6ac7
  Laurent Modolo authored 4 years ago
  
  618c6ac7
Feb 18, 2021
- add multiqc 1.9 · 819684ce
  Laurent Modolo authored 4 years ago
  
  819684ce
- fastp: add fastp 0.20.1 · 5b444810
  Laurent Modolo authored 4 years ago
  
  5b444810
- docker: add ps to macs3 · 79984ea1
  Laurent Modolo authored 4 years ago
  
  79984ea1
- docker: add macs3 · 88b0ccc4
  Laurent Modolo authored 4 years ago
  
  88b0ccc4
Feb 15, 2021
- fix fix g2gtools 0.2.8 · 0f8b9d13
  Laurent Modolo authored 4 years ago
  
  0f8b9d13
Feb 04, 2021
- docker: add deeptools 3.5.0 · 3b208403
  Laurent Modolo authored 4 years ago
  
  3b208403
- docker: add ucsc:407 · 81ab1116
  Laurent Modolo authored 4 years ago
  
  81ab1116
Jan 29, 2021
- docker: add samtools v1.11 · 962ac77e
  Laurent Modolo authored 4 years ago
  
  962ac77e
Jan 20, 2021
- fix r-base 4.0.2 · 9b4d697a
  Laurent Modolo authored 4 years ago
  
  9b4d697a
Dec 03, 2020
- add ribotricer docker module · d455e97e
  elabaron authored 4 years ago
  
  d455e97e
Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
  5cdad1d7
Sep 29, 2020
- tophat dockerfile : fix beug and add bowtie1 installation · 7a9844b5
  elabaron authored 4 years ago
  
  7a9844b5
Sep 09, 2020
- docker: fix r path in doker_init.sh · f318f0ff
  Laurent Modolo authored 4 years ago
  
  f318f0ff
- docker: add sabre 039a55e · 4c24548d
  Laurent Modolo authored 4 years ago
  
  4c24548d