Commits · 86073f758de56fe98784ace5873001a397136e68 · LBMC / nextflow

Jul 21, 2021
- macs2: set default qvalue to 0.99 · 6ddf33f5
  Laurent Modolo authored 3 years ago
  
  6ddf33f5
Jun 04, 2021
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
  cc2d49f6
Apr 14, 2021
- nf_modules: update module from g2gtools to multiqc to match the CONTRIBUTING.md · 8afe54bb
  Laurent Modolo authored 4 years ago
  
  8afe54bb
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 4 years ago
  
  4a7355a2
Mar 02, 2021
- macs2: caputre *_peaks.xls for multiqc report · 19ff2662
  Laurent Modolo authored 4 years ago
  
  19ff2662
Feb 22, 2021
- macs2: add file_id to output · 9a88f356
  Laurent Modolo authored 4 years ago
  
  9a88f356
Feb 20, 2021
- macs2: emit tuple with file_id · e7ba77d3
  Laurent Modolo authored 4 years ago
  
  e7ba77d3
- macs2: emit tuple with file_id · 6ebfb041
  Laurent Modolo authored 4 years ago
  
  6ebfb041
- macs2: fix narrowpeak capture · bd7b89f4
  Laurent Modolo authored 4 years ago
  
  bd7b89f4
- macs2: cleanup output · c6189ba3
  Laurent Modolo authored 4 years ago
  
  c6189ba3
Feb 18, 2021
- macs2: fix mfold option · 8c295a37
  Laurent Modolo authored 4 years ago
  
  8c295a37
- macs2: rm mfold param · d115c1c1
  Laurent Modolo authored 4 years ago
  
  d115c1c1
- macs2: fix macs call cmd · 88b5f2d5
  Laurent Modolo authored 4 years ago
  
  88b5f2d5
- macs2.nf: fix processes to match macs3 · 7d01e0e0
  Laurent Modolo authored 4 years ago
  
  7d01e0e0
Feb 03, 2021
- nf_module: remove publishDir instruction · ed7fec13
  Laurent Modolo authored 4 years ago
  
  ed7fec13
Jan 29, 2021
- nf_modules: update output tuple to handle list as file_id · 28a831bf
  Laurent Modolo authored 4 years ago
  
  28a831bf
Jan 22, 2021
- nf_modules: masc2 add DSL2 · a12e9229
  Laurent Modolo authored 4 years ago
  
  a12e9229
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 5 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 5 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 5 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 5 years ago
  
  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 6 years ago
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 6 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 6 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 6 years ago
  
  78189351
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 6 years ago
  
  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 6 years ago
  
  99eb8705
Apr 16, 2019
- macs2: add in2p3 config # Please enter the commit message for your changes. Lines starting · abd775c2
  Laurent Modolo authored 6 years ago
  
  abd775c2
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 6 years ago
  
  a972f993
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
  016b5b22
Mar 21, 2019
- add tests for macs2 · 5d14ce0b
  Laurent Modolo authored 6 years ago
  
  5d14ce0b