Commits · 86073f758de56fe98784ace5873001a397136e68 · LBMC / nextflow · GitLab

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Sep 01, 2021
- bowtie2: simplify index name · 55144a92
  Laurent Modolo authored 3 years ago
  
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  55144a92
Jun 04, 2021
- bowtie2: fix switch :67 · c05b8c6a
  Laurent Modolo authored 3 years ago
  
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  c05b8c6a
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
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  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
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  cc2d49f6
May 18, 2021
- bowtie2: change file_id handling · 192fef09
  Laurent Modolo authored 4 years ago
  
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  192fef09
Apr 16, 2021
- nf_modules: fix paired-single end handling · 481dc0d4
  Laurent Modolo authored 4 years ago
  
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  481dc0d4
Apr 15, 2021
- bowtie2: fix missing variable :49 · b5b2bda7
  Laurent Modolo authored 4 years ago
  
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  b5b2bda7
Apr 14, 2021
- CONTRIBUTING.md: add info on channel creation · dbbbac30
  Laurent Modolo authored 4 years ago
  
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  dbbbac30
- bowtie2: replace pair_id by file_id · 7c1e0c6c
  Laurent Modolo authored 4 years ago
  
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  7c1e0c6c
- bowtie2: fix input tuple :45 · 5de7aac6
  Laurent Modolo authored 4 years ago
  
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  5de7aac6
- bowtie2: update to match contributing.md · fd494cd5
  Laurent Modolo authored 4 years ago
  
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  fd494cd5
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 4 years ago
  
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  4a7355a2
Mar 12, 2021
- add paired_end and single_end switch version to all implementations · e4d5b19b
  Laurent Modolo authored 4 years ago
  
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  e4d5b19b
Feb 03, 2021
- nf_module: remove publishDir instruction · ed7fec13
  Laurent Modolo authored 4 years ago
  
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  ed7fec13
Jan 29, 2021
- nf_modules: update output tuple to handle list as file_id · 28a831bf
  Laurent Modolo authored 4 years ago
  
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  28a831bf
Jan 22, 2021
- nf_module: set index to be the 2nd input for mapping · cecad357
  Laurent Modolo authored 4 years ago
  
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  cecad357
Jan 20, 2021
- nf_modules: add DSL2 for cutadapt · 3490e2f1
  Laurent Modolo authored 4 years ago
  
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  3490e2f1
- nf_modules: add DSL2 module for bowtie2 · 209cb4b1
  Laurent Modolo authored 4 years ago
  
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  209cb4b1
Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
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  5cdad1d7
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 5 years ago
  
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  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 5 years ago
  
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  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 5 years ago
  
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  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 5 years ago
  
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  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
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  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
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  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
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  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
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  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
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  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
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  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
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  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
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  3ced2125
Jun 07, 2019
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored 5 years ago
  
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  78cf7e3c
- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored 5 years ago
  
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  44e1391d
- bowtie: nf, only keep 15 last lines of report · 92f8f605
  Laurent Modolo authored 5 years ago
  
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  92f8f605
- bowtie2: nf, only keep last 15 lines of report · 0977ef07
  Laurent Modolo authored 5 years ago
  
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  0977ef07
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 6 years ago
  
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  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 6 years ago
  
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  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 6 years ago
  
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  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 6 years ago
  
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  78189351
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 6 years ago
  
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  565ffad2