Commits · 7a115a1a092463b892906753d61cdf03a3699220 · LBMC / nextflow

Jul 22, 2021
- kb: t2g tools work and gz and plain file · 7a115a1a
  Laurent Modolo authored 3 years ago
  
  7a115a1a
Jul 21, 2021
- kb: create a correction step for the t2g.txt messed with by kb · 5dc7c7f8
  Laurent Modolo authored 3 years ago
  
  5dc7c7f8
Jul 15, 2021
- kb: remove gffutils buggy dependency for t2g.txt construction · 57bdbc31
  Laurent Modolo authored 3 years ago
  
  57bdbc31
Jul 13, 2021
- kb: go back to working 0.26.0 version · a9f4a856
  Laurent Modolo authored 3 years ago
  
  a9f4a856
- kb: add libcurl to dockerfile · b300770d
  Laurent Modolo authored 3 years ago
  
  b300770d
Jul 09, 2021
- kb: update to 0.26.3 · f7a50522
  Laurent Modolo authored 3 years ago
  
  f7a50522
- t2g.py: fool proof output format · 14de29a9
  Laurent Modolo authored 3 years ago
  
  14de29a9
Jul 08, 2021
- bedtools: add v2.30.0 · fda70fd4
  Laurent Modolo authored 3 years ago
  
  fda70fd4
Jul 07, 2021
- kb: enable infer tr and gn in t2g.py · f7dad66d
  Laurent Modolo authored 3 years ago
  
  f7dad66d
Jul 05, 2021
- t2g.py: fix indentation · 3a878b65
  Laurent Modolo authored 3 years ago
  
  3a878b65
Jun 24, 2021
- docker: add htseq 0.13.5 · ed5b2f47
  Laurent Modolo authored 3 years ago
  
  ed5b2f47
Jun 09, 2021
- deeptools: fix docker file for 3.5.1 · 8d92ac19
  Laurent Modolo authored 3 years ago
  
  8d92ac19
Jun 04, 2021
- deeptools: add libcurl3 dependency · 414cc8b9
  Laurent Modolo authored 3 years ago
  
  414cc8b9
Jun 02, 2021
- Docker: add emase 0.10.16 · 6614fc01
  Laurent Modolo authored 3 years ago
  
  v2.0.0
  
  6614fc01
May 20, 2021
- gffread: add version 0.12.2 · 9eb61947
  Laurent Modolo authored 3 years ago
  
  9eb61947
May 18, 2021
- kb: change t2g.py to use classical transcript and gene gtf format · bd5b4ace
  Laurent Modolo authored 3 years ago
  
  bd5b4ace
May 12, 2021
- kb: fix t2g.py to have first transcript and then gene · fdb6eac6
  Laurent Modolo authored 3 years ago
  
  fdb6eac6
May 06, 2021
- alntools: add six module · 03d1b183
  Laurent Modolo authored 3 years ago
  
  03d1b183
May 05, 2021
- alntools: add gawk to docker · 778f3cdc
  Laurent Modolo authored 3 years ago
  
  778f3cdc
Apr 29, 2021
- kb: add transcript to gene script to Docker · 6efd55d6
  Laurent Modolo authored 3 years ago
  
  6efd55d6
Apr 28, 2021
- kb: add ps to Dockerfile · c97a2a20
  Laurent Modolo authored 3 years ago
  
  c97a2a20
Apr 27, 2021
- Docker: add flexi_splitter 1.0.2 · 6adf0f27
  Laurent Modolo authored 3 years ago
  
  6adf0f27
- deeptools: update to v3.5.1 · 15ba0f1c
  Laurent Modolo authored 3 years ago
  
  15ba0f1c
- deeptools: add ps to Dockerfile · 421ac4d4
  Laurent Modolo authored 3 years ago
  
  421ac4d4
Apr 26, 2021
- kallisto: fix singleend reads table · 8fc16bd7
  Laurent Modolo authored 3 years ago
  
  8fc16bd7
Mar 25, 2021
- Docker: add alntools:dd96682 · a83195d8
  Laurent Modolo authored 4 years ago
  
  a83195d8
- Docker: add emase-zero:0.3.1 · 3888c6a4
  Laurent Modolo authored 4 years ago
  
  3888c6a4
Mar 22, 2021
- Docker: add pandoc 2.11 · 5f4f434b
  Laurent Modolo authored 4 years ago
  
  5f4f434b
Mar 15, 2021
- Docker: add minimap2:2.17 · 364632ef
  Laurent Modolo authored 4 years ago
  
  364632ef
Mar 12, 2021
- Docker: add star 2.5.3 · e66e20ab
  Laurent Modolo authored 4 years ago
  
  e66e20ab
- Docker: g2gtools, add procps for nextflow · 8ea08355
  Laurent Modolo authored 4 years ago
  
  8ea08355
- Docker: fix g2gtools dependencies · bc5cc99e
  Laurent Modolo authored 4 years ago
  
  bc5cc99e
- Docker: g2gtools add pysam dependency · 308f6c25
  Laurent Modolo authored 4 years ago
  
  308f6c25
Mar 08, 2021
- docker: add r 4.0.3 · ead3fe96
  Laurent Modolo authored 4 years ago
  
  ead3fe96
Feb 20, 2021
- docker: bwa replace sambamba with samtools · ec1d8657
  Laurent Modolo authored 4 years ago
  
  ec1d8657
- bwa: replace sambamba by sambools · 0e7adae3
  Laurent Modolo authored 4 years ago
  
  0e7adae3
- docker: bwa fix sambamba rights · 618c6ac7
  Laurent Modolo authored 4 years ago
  
  618c6ac7
Feb 18, 2021
- add multiqc 1.9 · 819684ce
  Laurent Modolo authored 4 years ago
  
  819684ce
- fastp: add fastp 0.20.1 · 5b444810
  Laurent Modolo authored 4 years ago
  
  5b444810
- docker: add ps to macs3 · 79984ea1
  Laurent Modolo authored 4 years ago
  
  79984ea1