Commits · 670315f58b966b58036a3f5c175feea8a1245762 · LBMC / nextflow · GitLab

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Apr 20, 2020
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  c116038b
Dec 13, 2019
- cutadapt: config change version from 2.1 to 2.4 · 2b14934b
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  2b14934b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  Verified
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  Verified
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  Verified
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  Verified
  
  78189351
May 17, 2019
- config files: updater monocore queues for psmn · 21a8f8b8
  Laurent Modolo authored 5 years ago
  
  Verified
  
  21a8f8b8
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
  Verified
  
  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
  Verified
  
  99eb8705
Apr 16, 2019
- cutadapt: add in2p3 config · e573e51f
  Laurent Modolo authored 5 years ago
  
  Verified
  
  e573e51f
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  Verified
  
  a972f993
Apr 09, 2019
- cutadapt: add v2.1 · d280e93a
  Laurent Modolo authored 5 years ago
  
  Verified
  
  d280e93a
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  016b5b22
Mar 06, 2019
- cutadapt: add singularity to nf files and add -resume to all tests.sh · 60040ed6
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  60040ed6
Feb 20, 2019
- cudatapt: add cutadapt v1.15 for docker and nf · 93f2be99
  Laurent Modolo authored 6 years ago
  
  93f2be99
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  e057e9a1
Oct 23, 2018
- nf module: update executor from psmn to sge · 9fdc0424
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  9fdc0424
- nf config: rename sge to psmn · fa486dc6
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  fa486dc6
- cutadapt: update nf config files for the PSMN · 0e1bad5e
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  0e1bad5e
Aug 31, 2018
- nf_modules: fix tests.sh to use local nextflow bin · 5386a286
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  5386a286
Aug 22, 2018
- Cutadapt: update nf structure · b5d57719
  Laurent Modolo authored 6 years ago
  
  Verified
  
  b5d57719
Aug 02, 2018
- cutadapt: nf file add file_id var for single-end like for paired · a6ae64ae
  Laurent Modolo authored 6 years ago
  
  v0.2.4 Verified
  
  a6ae64ae
Jun 07, 2018
- paired.nf files : pass the pair_id information in output · 5236de95
  Laurent Modolo authored 6 years ago
  
  Verified
  
  5236de95
Jun 06, 2018
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3454e1e8
- trimming: make output channel more clear · 52d58451
  Laurent Modolo authored 6 years ago
  
  Verified
  
  52d58451
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  8aee48b9
Jun 05, 2018
- mv nf files to nf_modules · 705226a9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  705226a9
- mv nf_modules to docker_modules · f51bf1e4
  Laurent Modolo authored 6 years ago
  
  Verified
  
  f51bf1e4
- make tests.sh files executable · aac63da9
  Laurent Modolo authored 6 years ago
  
  v0.1.0 Verified
  
  aac63da9
Jun 04, 2018
- fix docker configuration · b0a4d2c1
  Laurent Modolo authored 6 years ago
  
  Verified
  
  b0a4d2c1