Commits · 4beda1d113930eb620717ea6a734cfedec76db7d · LBMC / nextflow · GitLab

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Oct 12, 2018
- 1_JU28_59vs17_SNP_calling.sh: change genome ref for intersect_SNP.R · 4beda1d1
  Laurent Modolo authored 6 years ago
  
  4beda1d1
Oct 11, 2018
- 1_JU28_59vs17_SNP_calling.sh: add analysis of final_assembly.fasta · 4aec8f08
  Laurent Modolo authored 6 years ago
  
  4aec8f08
- 1_JU28_59vs17_SNP_calling.sh: add PSMN cmd · 741269e6
  Laurent Modolo authored 6 years ago
  
  741269e6
Oct 09, 2018
- 1_JU28_59vs17_SNP_calling.sh: test of blast · 5d990d32
  Laurent Modolo authored 6 years ago
  
  5d990d32
- 1_JU28_59vs17_SNP_calling.sh: blast of 5S on the assembly · b6551f07
  Laurent Modolo authored 6 years ago
  
  b6551f07
- intersect_SNP.R: add enzyme selection · f0432019
  Laurent Modolo authored 6 years ago
  
  f0432019
Oct 08, 2018
- 1_JU28_59vs17_SNP_calling.R: add SNP alert · a79c7a67
  Laurent Modolo authored 6 years ago
  
  a79c7a67
- 1_JU28_59vs17_SNP_calling.R: add SNP filtering step · 7bf6ea38
  Laurent Modolo authored 6 years ago
  
  7bf6ea38
Oct 04, 2018
- 1_JU28_59vs17_SNP_calling.nf: fix encoding problem for genome · 58e36e9e
  Laurent Modolo authored 6 years ago
  
  58e36e9e
Oct 03, 2018
- 1_JU28_59vs17_SNP_calling.sh: fix tests cmd · 147563d6
  Laurent Modolo authored 6 years ago
  
  147563d6
- SNP_calling: test with Bowtie2 · 25be4607
  Laurent Modolo authored 6 years ago
  
  25be4607
Oct 02, 2018
- 1_JU28_59vs17_SNP_calling.sh: add training step analysis · 6ff24e84
  Laurent Modolo authored 6 years ago
  
  6ff24e84
Sep 25, 2018
- SNP_calling.nf: add merging step into tumor_sample and normal_sample · 60a814b3
  Laurent Modolo authored 6 years ago
  
  60a814b3
Sep 24, 2018
- 1_JU28_59vs17_SNP_calling.sh: add cmd for Mutect2 · 2d8f8287
  Laurent Modolo authored 6 years ago
  
  2d8f8287
Sep 18, 2018
- 1_JU28_59vs17_SNP_calling.sh: add sh to launch pipeline · 7efa0b93
  Laurent Modolo authored 6 years ago
  
  7efa0b93