Commits · 4b33241edecf1c1b88a35a9aef8edbc65b2500e7 · LBMC / nextflow · GitLab

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Feb 18, 2021
- nextflow.config: fix psmn monocpu cmd · 4b33241e
  Laurent Modolo authored 4 years ago
  
  Verified
  
  4b33241e
- nextflow.config: add 192 monointerl queue for psmn · e7d4fec1
  Laurent Modolo authored 4 years ago
  
  Verified
  
  e7d4fec1
Feb 17, 2021
- nextflow.config: fix errorStrategy · 8fe24a84
  Laurent Modolo authored 4 years ago
  
  Verified
  
  8fe24a84
- nextflow.config: simplify errorStrategy for computing grid · eed28334
  Laurent Modolo authored 4 years ago
  
  Verified
  
  eed28334
- nextflow.config: change errorStrategy · 04fa21c5
  Laurent Modolo authored 4 years ago
  
  Verified
  
  04fa21c5
Feb 04, 2021
- nextfow.config: update base default version · cfd71a7d
  Laurent Modolo authored 4 years ago
  
  Verified
  
  cfd71a7d
Jan 27, 2021
- nextflow.config: add memory limits · ebecfb6d
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  ebecfb6d
Jan 22, 2021
- nextflow.config: change queue list for psmn · 629de1ab
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  629de1ab
- nextflow.config: add missing space :40 · 924256a1
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  924256a1
Jan 20, 2021
- nextflow.config: add generic config file for module use · d3176121
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  d3176121
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  Verified
  
  f8fe5b84
May 20, 2019
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  Verified
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  Verified
  
  78189351
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
  Verified
  
  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
  Verified
  
  99eb8705
Apr 16, 2019
- deeptools: add in2p3 config · 1e4f4848
  Laurent Modolo authored 5 years ago
  
  Verified
  
  1e4f4848
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  Verified
  
  a972f993
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
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  016b5b22
Mar 06, 2019
- deeptools: add singularity to files · dde8e8a2
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  dde8e8a2
- nf_modules: update config files to match psmn lowercase module names · 80b5c871
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  80b5c871
Mar 04, 2019
- rename module to lowercase · 231fd9e6
  Laurent Modolo authored 6 years ago
  
  v0.2.8 Verified
  
  231fd9e6
Dec 19, 2018
- deepTools: add compute_matrix module · b25a6418
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  b25a6418
- deepTools: bam_to_bigwig working · a095fa9d
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  a095fa9d
- deepTools: add config file for bam_to_bigwig · 543e35a0
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  543e35a0
- nf_modules: fix withname -> withName in config files · 85a68216
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  85a68216
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  e057e9a1
Oct 23, 2018
- FastQC: nf update psmn config · 5760392e
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  5760392e