Commits · 2fde78ba219959000d5dbdd51834ee0bf49d5529 · LBMC / nextflow · GitLab

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Feb 22, 2021
- picard: improve picard index output · 2fde78ba
  Laurent Modolo authored 4 years ago
  
  Verified
  
  2fde78ba
- samtools: fix merge_multi_bam · 493aaa15
  Laurent Modolo authored 4 years ago
  
  Verified
  
  493aaa15
- samtools: fix merge_multi_bam · aa838665
  Laurent Modolo authored 4 years ago
  
  Verified
  
  aa838665
Feb 17, 2021
- samtools: modify output name of merge_multi_bam · cd23e1e3
  Laurent Modolo authored 4 years ago
  
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  cd23e1e3
- samtools: add process to merge multiple bam · ff5c7a24
  Laurent Modolo authored 4 years ago
  
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  ff5c7a24
Feb 15, 2021
- add gatk3 to DSL2 · 4a115a8a
  Laurent Modolo authored 4 years ago
  
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  4a115a8a
- update picard samtools and bwa for DSL2 · 7a17de40
  Laurent Modolo authored 4 years ago
  
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  7a17de40
Feb 03, 2021
- samtools: main.nf clarify bam_index output1 · b9d4fdda
  Laurent Modolo authored 4 years ago
  
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  b9d4fdda
- samtools: test for indexing · ed50e0a0
  Laurent Modolo authored 4 years ago
  
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  ed50e0a0
Jan 29, 2021
- samtools: change file_id to bam.simpleName · 0dff7e33
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  0dff7e33
- docker: add samtools v1.11 · 962ac77e
  Laurent Modolo authored 4 years ago
  
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  962ac77e
- samtools: fix flagstats cmd · ebb5cb65
  Laurent Modolo authored 4 years ago
  
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  ebb5cb65
- samtools: change label for bam_stats · 42f56bde
  Laurent Modolo authored 4 years ago
  
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  42f56bde
- samtools: add bam_stats process · a4d4bdb9
  Laurent Modolo authored 4 years ago
  
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  a4d4bdb9
Jan 25, 2021
- samtools: fix filter_bam_mapped · e3a42082
  Laurent Modolo authored 4 years ago
  
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  e3a42082
- samtools: fix catched bams names · 9f34d846
  Laurent Modolo authored 4 years ago
  
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  9f34d846
- samtools: fix samtools version · a8e8560a
  Laurent Modolo authored 4 years ago
  
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  a8e8560a
- fix input and output for bedtools and samtools · 8bebb4a1
  Laurent Modolo authored 4 years ago
  
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  8bebb4a1
- samtools: nf_module add mapped and unmapped filter · de331fa7
  Laurent Modolo authored 4 years ago
  
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  de331fa7
Jan 22, 2021
- nf_modules: add samtools DSL2 · 3de89ded
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  3de89ded