Commits · 2150d981381435d302da8ccce1fc8b9b2105c0ab · LBMC / nextflow · GitLab

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Jun 04, 2021
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
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  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
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  cc2d49f6
Apr 26, 2021
- kallisto: fix singleend reads table · 8fc16bd7
  Laurent Modolo authored 3 years ago
  
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  8fc16bd7
Apr 16, 2021
- kallisto: fix output capture · 91ec481f
  Laurent Modolo authored 3 years ago
  
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  91ec481f
- nf_modules: fix paired-single end handling · 481dc0d4
  Laurent Modolo authored 3 years ago
  
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  481dc0d4
Apr 14, 2021
- kallisto: update script to match CONTRIBUTING.md · be4657c7
  Laurent Modolo authored 3 years ago
  
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  be4657c7
- kallisto: fix warning in mapping_fastq about single-end parameters · 6f027a2e
  Laurent Modolo authored 3 years ago
  
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  6f027a2e
Apr 13, 2021
- update solution_RNASeq.nf to match CONTRIBUTING.md · 8b70de28
  Laurent Modolo authored 3 years ago
  
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  8b70de28
- kallisto: fix typo :15 · b2f88ee7
  Laurent Modolo authored 3 years ago
  
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  b2f88ee7
- kallisto: update file to match CONTRIBUTING.md · 9a588dd5
  Laurent Modolo authored 3 years ago
  
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  9a588dd5
- kallisto: fix typo :47 · 8ddc3ee6
  Laurent Modolo authored 3 years ago
  
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  8ddc3ee6
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 3 years ago
  
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  4a7355a2
Feb 03, 2021
- nf_module: remove publishDir instruction · ed7fec13
  Laurent Modolo authored 4 years ago
  
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  ed7fec13
Jan 29, 2021
- nf_modules: update output tuple to handle list as file_id · 28a831bf
  Laurent Modolo authored 4 years ago
  
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  28a831bf
Jan 22, 2021
- nf_module: set index to be the 2nd input for mapping · cecad357
  Laurent Modolo authored 4 years ago
  
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  cecad357
Jan 20, 2021
- nf_modules: add kallisto to DSL2 · 6706a92d
  Laurent Modolo authored 4 years ago
  
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  6706a92d
Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
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  5cdad1d7
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
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  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
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  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
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  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
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  c116038b
Jan 17, 2020
- kallisto indexing.config: fix typo · 195e5ce1
  Laurent Modolo authored 5 years ago
  
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  195e5ce1
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
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  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
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  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
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  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
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  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
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  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
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  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
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  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
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  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
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  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
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  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
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  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
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  78189351
- in2p3 test: make singularity default for ccin2p3 · 09e2b2fc
  Laurent Modolo authored 5 years ago
  
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  09e2b2fc
- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 5 years ago
  
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  883c3c3e
- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 5 years ago
  
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  0f3a7c43
- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 5 years ago
  
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  f6921da8
- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 5 years ago
  
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  b6101c65
- in2p3: test singularity automount · 854a1709
  Laurent Modolo authored 5 years ago
  
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  854a1709