Commits · 15ba0f1c18edc0d2326759d1f56e153a34f5e7b0 · LBMC / nextflow

Apr 27, 2021
- deeptools: update to v3.5.1 · 15ba0f1c
  Laurent Modolo authored 3 years ago
  
  15ba0f1c
- deeptools: add ps to Dockerfile · 421ac4d4
  Laurent Modolo authored 3 years ago
  
  421ac4d4
Apr 26, 2021
- kallisto: fix singleend reads table · 8fc16bd7
  Laurent Modolo authored 3 years ago
  
  8fc16bd7
Mar 25, 2021
- Docker: add alntools:dd96682 · a83195d8
  Laurent Modolo authored 4 years ago
  
  a83195d8
- Docker: add emase-zero:0.3.1 · 3888c6a4
  Laurent Modolo authored 4 years ago
  
  3888c6a4
Mar 22, 2021
- Docker: add pandoc 2.11 · 5f4f434b
  Laurent Modolo authored 4 years ago
  
  5f4f434b
Mar 15, 2021
- Docker: add minimap2:2.17 · 364632ef
  Laurent Modolo authored 4 years ago
  
  364632ef
Mar 12, 2021
- Docker: add star 2.5.3 · e66e20ab
  Laurent Modolo authored 4 years ago
  
  e66e20ab
- Docker: g2gtools, add procps for nextflow · 8ea08355
  Laurent Modolo authored 4 years ago
  
  8ea08355
- Docker: fix g2gtools dependencies · bc5cc99e
  Laurent Modolo authored 4 years ago
  
  bc5cc99e
- Docker: g2gtools add pysam dependency · 308f6c25
  Laurent Modolo authored 4 years ago
  
  308f6c25
Mar 08, 2021
- docker: add r 4.0.3 · ead3fe96
  Laurent Modolo authored 4 years ago
  
  ead3fe96
Feb 20, 2021
- docker: bwa replace sambamba with samtools · ec1d8657
  Laurent Modolo authored 4 years ago
  
  ec1d8657
- bwa: replace sambamba by sambools · 0e7adae3
  Laurent Modolo authored 4 years ago
  
  0e7adae3
- docker: bwa fix sambamba rights · 618c6ac7
  Laurent Modolo authored 4 years ago
  
  618c6ac7
Feb 18, 2021
- add multiqc 1.9 · 819684ce
  Laurent Modolo authored 4 years ago
  
  819684ce
- fastp: add fastp 0.20.1 · 5b444810
  Laurent Modolo authored 4 years ago
  
  5b444810
- docker: add ps to macs3 · 79984ea1
  Laurent Modolo authored 4 years ago
  
  79984ea1
- docker: add macs3 · 88b0ccc4
  Laurent Modolo authored 4 years ago
  
  88b0ccc4
Feb 15, 2021
- fix fix g2gtools 0.2.8 · 0f8b9d13
  Laurent Modolo authored 4 years ago
  
  0f8b9d13
Feb 04, 2021
- docker: add deeptools 3.5.0 · 3b208403
  Laurent Modolo authored 4 years ago
  
  3b208403
- docker: add ucsc:407 · 81ab1116
  Laurent Modolo authored 4 years ago
  
  81ab1116
Jan 29, 2021
- docker: add samtools v1.11 · 962ac77e
  Laurent Modolo authored 4 years ago
  
  962ac77e
Jan 20, 2021
- fix r-base 4.0.2 · 9b4d697a
  Laurent Modolo authored 4 years ago
  
  9b4d697a
Dec 03, 2020
- add ribotricer docker module · d455e97e
  elabaron authored 4 years ago
  
  d455e97e
Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
  5cdad1d7
Sep 29, 2020
- tophat dockerfile : fix beug and add bowtie1 installation · 7a9844b5
  elabaron authored 4 years ago
  
  7a9844b5
Sep 09, 2020
- docker: fix r path in doker_init.sh · f318f0ff
  Laurent Modolo authored 4 years ago
  
  f318f0ff
- docker: add sabre 039a55e · 4c24548d
  Laurent Modolo authored 4 years ago
  
  4c24548d
Aug 31, 2020
- docker: mv r folder to r-base folder to be consistent with img names · fcb7af24
  Laurent Modolo authored 4 years ago
  
  fcb7af24
- docker: add r-base 4.0.2 · 0415e251
  Laurent Modolo authored 4 years ago
  
  0415e251
Aug 17, 2020
- docker: add bash to g2gtools:0.2.8 · 62c9c2ea
  Laurent Modolo authored 4 years ago
  
  62c9c2ea
- docker: add bash to g2gtools:0.2.7 · 45e909cd
  Laurent Modolo authored 4 years ago
  
  45e909cd
- gffread: fix missing \ in Dockerfile · a61d4601
  Laurent Modolo authored 4 years ago
  
  a61d4601
Jul 24, 2020
- docker: add bash to gffread:0.11.8 · 92007b4a
  Laurent Modolo authored 4 years ago
  
  92007b4a
- docker: add gffread:0.11.8 · 48c10de5
  Laurent Modolo authored 4 years ago
  
  48c10de5
Jul 20, 2020
- docker: add kallistobustools:0.39.3 with t2g.py · 26a87183
  Laurent Modolo authored 4 years ago
  
  26a87183
Jul 13, 2020
- docker: add crossmap:0.4.1 · e4e83076
  Laurent Modolo authored 4 years ago
  
  e4e83076
- docker: add ucsc:400 · 4d4b9c97
  Laurent Modolo authored 4 years ago
  
  4d4b9c97
- docker: add bedops:2.4.39 · bda23695
  Laurent Modolo authored 4 years ago
  
  bda23695