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Verified Commit e7bfb733 authored by Laurent Modolo's avatar Laurent Modolo
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bwa: fix typo :42

parent c99e5a39
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...@@ -39,7 +39,7 @@ process mapping_fastq { ...@@ -39,7 +39,7 @@ process mapping_fastq {
bwa mem -t ${task.cpus} \ bwa mem -t ${task.cpus} \
${index_id} ${reads[0]} ${reads[1]} 2> \ ${index_id} ${reads[0]} ${reads[1]} 2> \
${file_id}_bwa_report.txt | \ ${file_id}_bwa_report.txt | \
samtools view -@ ${task.cpus} -Sb - > ${pair_id}.bam samtools view -@ ${task.cpus} -Sb - > ${file_id}.bam
""" """
} }
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