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Verified Commit d115c1c1 authored by Laurent Modolo's avatar Laurent Modolo
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macs2: rm mfold param

parent 88b5f2d5
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...@@ -2,7 +2,6 @@ version = "2.1.2" ...@@ -2,7 +2,6 @@ version = "2.1.2"
container_url = "lbmc/macs2:${version}" container_url = "lbmc/macs2:${version}"
params.macs_gsize=3e9 params.macs_gsize=3e9
params.macs_mfold=[5, 50]
process peak_calling { process peak_calling {
container = "${container_url}" container = "${container_url}"
...@@ -24,7 +23,6 @@ macs2 callpeak \ ...@@ -24,7 +23,6 @@ macs2 callpeak \
--call-summits \ --call-summits \
--control ${bam_control} \ --control ${bam_control} \
--keep-dup all \ --keep-dup all \
--mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bam_ip.simpleName} \ --name ${bam_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \ --gsize ${params.macs_gsize} 2> \
${bam_ip.simpleName}_macs2_report.txt ${bam_ip.simpleName}_macs2_report.txt
...@@ -60,7 +58,6 @@ macs2 callpeak \ ...@@ -60,7 +58,6 @@ macs2 callpeak \
--call-summits \ --call-summits \
--control ${bg_control.simpleName}.bed \ --control ${bg_control.simpleName}.bed \
--keep-dup all \ --keep-dup all \
--mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bg_ip.simpleName} \ --name ${bg_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \ --gsize ${params.macs_gsize} 2> \
${bg_ip.simpleName}_macs2_report.txt ${bg_ip.simpleName}_macs2_report.txt
......
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