Merge branch 'master' into 'master'

Updates to src/nextflow.config

See merge request !30

src/nextflow.config

@@ -85,39 +85,32 @@ profiles {
   }
   psmn {
     charliecloud.enabled = true
-    cacheDir = "/Xnfs/abc/charliecloud"
-    runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs --bind /home:/home"
-    readOnlyInputs = true
+    charliecloud.cacheDir = "/Xnfs/abc/charliecloud"
+    charliecloud.readOnlyInputs = true
     process{
       errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
       maxRetries = 3
+      executor = "slurm"
+      queue = "Lake"
       withLabel: big_mem_mono_cpus {
-        executor = "slurm"
         cpus = 1
         memory = "128GB"
         time = "24h"
-        clusterOptions = "--partition=Lake"
       }
       withLabel: big_mem_multi_cpus {
-        executor = "slurm"
         cpus = 32
         memory = "192GB"
         time = "24h"
-        clusterOptions = "--partition=Lake"
       }
       withLabel: small_mem_mono_cpus {
-        executor = "slurm"
         cpus = 1
         memory = "16GB"
         time = "24h"
-        clusterOptions = "--partition=Lake"
       }
       withLabel: small_mem_multi_cpus {
-        executor = "slurm"
         cpus = 32
         memory = "16GB"
         time = "24h"
-        clusterOptions = "--partition=Lake"
       }
     }
   }