src/nf_modules/Hisat2/hisat2.config : nextflow configuration file for hista2

src/nf_modules/Hisat2/hisat2.config

+profiles {
+  docker {
+    docker.temp = 'auto'
+    docker.enabled = true
+    process {
+      $index_fasta {
+        container = "hisat2:2.0.0"
+      }
+      $mapping_fastq {
+        container = "hisat2:2.0.0"
+      }
+      $bam_converter {
+        container = "samtools:1.7"
+      }
+    }
+  }
+  sge {
+    process{
+      $index_fasta {
+        beforeScript = "module purge; module load Hisat2/2.0.0"
+        executor = "sge"
+        cpus = 1
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'h6-E5-2667v4deb128'
+        penv = 'openmp8'
+      }
+      $mapping_fastq {
+        beforeScript = "module purge; module load Hisat2/2.0.0"
+        executor = "sge"
+        cpus = 4
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'h6-E5-2667v4deb128'
+        penv = 'openmp8'
+      }
+      $bam_converter {
+        beforeScript = "module purge; module load SAMtools/1.5"
+        executor = "sge"
+        cpus = 4
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'h6-E5-2667v4deb128'
+        penv = 'openmp8'
+      }
+    }
+  }
+}