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Verified Commit a7358e47 authored by Laurent Modolo's avatar Laurent Modolo
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samtools: rename flagstat log for multiqc

parent 6a448ad6
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...@@ -272,7 +272,7 @@ process stats_bam { ...@@ -272,7 +272,7 @@ process stats_bam {
tuple val(file_id), path("*.tsv"), emit: tsv tuple val(file_id), path("*.tsv"), emit: tsv
script: script:
""" """
samtools flagstat -@ ${task.cpus} ${params.stats_bam} -O tsv ${bam} > ${bam.simpleName}_stats.tsv samtools flagstat -@ ${task.cpus} ${params.stats_bam} -O tsv ${bam} > ${bam.simpleName}.flagstat.txt
""" """
} }
......
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