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Verified Commit 9db26e04 authored by Laurent Modolo's avatar Laurent Modolo
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gffread: unzip gtf for spliced_cds process

parent fbd31a43
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...@@ -55,7 +55,8 @@ process spliced_cds { ...@@ -55,7 +55,8 @@ process spliced_cds {
} }
""" """
gzip -dc ${fasta} > ${fasta.simpleName}_un.fasta gzip -dc ${fasta} > ${fasta.simpleName}_un.fasta
gffread -x -M - -g ${fasta.simpleName}_un.fasta ${gtf} \ gzip -dc ${gtf} > ${gff.simpleName}_un.gtf
gffread -x -M - -g ${fasta.simpleName}_un.fasta ${gff.simpleName}_un.gtf \
> ${file_prefix}.fasta > ${file_prefix}.fasta
""" """
} }
\ No newline at end of file
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