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Unverified Commit 93255688 authored by Laurent Modolo's avatar Laurent Modolo
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Docker: update name of module to lbmc/module:version

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#!/bin/sh
docker build src/docker_modules/bcftools/1.7 -t 'bcftools:1.7'
docker build src/docker_modules/bcftools/1.7 -t 'lbmc/bcftools:1.7'
#!/bin/sh
docker build src/docker_modules/bedtools/2.25.0 -t 'bedtools:2.25.0'
docker build src/docker_modules/bedtools/2.25.0 -t 'lbmc/bedtools:2.25.0'
#!/bin/sh
docker build src/docker_modules/bioawk/1.0 -t 'bioawk:1.0'
docker build src/docker_modules/bioawk/1.0 -t 'lbmc/bioawk:1.0'
#!/bin/sh
docker build src/docker_modules/bowtie/1.2.2 -t 'bowtie:1.2.2'
docker build src/docker_modules/bowtie/1.2.2 -t 'lbmc/bowtie:1.2.2'
#!/bin/sh
docker build src/docker_modules/bowtie2/2.3.4.1 -t 'bowtie2:2.3.4.1'
docker build src/docker_modules/bowtie2/2.3.4.1 -t 'lbmc/bowtie2:2.3.4.1'
#!/bin/sh
docker build src/docker_modules/bwa/0.7.17 -t 'bwa:0.7.17'
docker build src/docker_modules/bwa/0.7.17 -t 'lbmc/bwa:0.7.17'
#!/bin/sh
docker build src/docker_modules/canu/1.6 -t 'canu:1.6'
docker build src/docker_modules/canu/1.6 -t 'lbmc/canu:1.6'
#!/bin/sh
docker build src/docker_modules/cutadapt/1.14 -t 'cutadapt:1.14'
docker build src/docker_modules/cutadapt/1.14 -t 'lbmc/cutadapt:1.14'
#!/bin/sh
docker build src/docker_modules/cutadapt/1.15 -t 'cutadapt:1.15'
docker build src/docker_modules/cutadapt/1.15 -t 'lbmc/cutadapt:1.15'
#!/bin/sh
docker build src/docker_modules/cutadapt/2.1 -t 'cutadapt:2.1'
docker build src/docker_modules/cutadapt/2.1 -t 'lbmc/cutadapt:2.1'
#!/bin/sh
docker build src/docker_modules/deeptools/3.0.2 -t 'deeptools:3.0.2'
docker build src/docker_modules/deeptools/3.0.2 -t 'lbmc/deeptools:3.0.2'
#!/bin/sh
docker build src/docker_modules/deeptools/3.1.1 -t 'deeptools:3.1.1'
docker build src/docker_modules/deeptools/3.1.1 -t 'lbmc/deeptools:3.1.1'
#!/bin/sh
fd "Dockerfile" src/docke_modules | perl -pe 's|.*docker_modules/(.*)/(.*)/Dockerfile|\1:\2|g' | awk '{system("docker tag "$0" lbmc/" $0"; docker push lbmc/"$0)}'
fd "Dockerfile" src/docke_modules | perl -pe 's|.*docker_modules/(.*)/(.*)/Dockerfile|\1:\2|g' | awk '{system("docker push lbmc/"$0)}'
#!/bin/sh
docker build src/docker_modules/fastp/0.19.7 -t 'fastp:0.19.7'
docker build src/docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7'
#!/bin/sh
docker build src/docker_modules/fastqc/0.11.5 -t 'fastqc:0.11.5'
docker build src/docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5'
#!/bin/sh
docker build src/docker_modules/file_handle/0.1.1 -t 'file_handle:0.1.1'
docker build src/docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1'
#!/bin/sh
docker build src/docker_modules/gatk/4.0.8.1 -t 'gatk:4.0.8.1'
docker build src/docker_modules/gatk/4.0.8.1 -t 'lbmc/gatk:4.0.8.1'
#!/bin/sh
docker build src/docker_modules/hisat2/2.0.0 -t 'hisat2:2.0.0'
docker build src/docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0'
#!/bin/sh
docker build src/docker_modules/hisat2/2.1.0 -t 'hisat2:2.1.0'
docker build src/docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0'
#!/bin/sh
docker build src/docker_modules/htseq/0.11.2 -t 'htseq:0.11.2'
docker build src/docker_modules/htseq/0.11.2 -t 'lbmc/htseq:0.11.2'
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