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Verified Commit 913a420c authored by Laurent Modolo's avatar Laurent Modolo
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gatk4: change recalibrate_snp to pair recall_table with BAM

parent f4e08eb8
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...@@ -144,8 +144,7 @@ process recalibrate_snp { ...@@ -144,8 +144,7 @@ process recalibrate_snp {
tag "$file_id" tag "$file_id"
input: input:
tuple val(file_id), path(snp_file), path(indel_file), path(bam), path(bam_idx) tuple val(file_id), path(snp_file), path(indel_file), path(bam), path(bam_idx), path(recal_table)
tuple val(table_id), path(recal_data_table)
tuple val(ref_id), path(fasta), path(fai), path(dict) tuple val(ref_id), path(fasta), path(fai), path(dict)
output: output:
tuple val(file_id), path("*.bam"), emit: bam tuple val(file_id), path("*.bam"), emit: bam
......
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