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Unverified Commit 85a68216 authored by Laurent Modolo's avatar Laurent Modolo
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nf_modules: fix withname -> withName in config files

parent 03bee3cf
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......@@ -3,14 +3,14 @@ profiles {
docker.temp = 'auto'
docker.enabled = true
process {
withname: split_bam {
withName: split_bam {
container = "samtools:1.7"
}
}
}
psmn {
process{
withname: split_bam {
withName: split_bam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
executor = "sge"
......
......@@ -3,14 +3,14 @@ profiles {
docker.temp = 'auto'
docker.enabled = true
process {
withname: fastq_dump {
withName: fastq_dump {
container = "sratoolkit:2.8.2"
}
}
}
psmn {
process{
withname: fastq_dump {
withName: fastq_dump {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SRAtoolkit/2.8.2"
executor = "sge"
......
......@@ -3,14 +3,14 @@ profiles {
docker.temp = 'auto'
docker.enabled = true
process {
withname: index_bam {
withName: index_bam {
container = "sambamba:0.6.7"
}
}
}
psmn {
process{
withname: index_bam {
withName: index_bam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "sambamba/0.6.7"
executor = "sge"
......
......@@ -3,14 +3,14 @@ profiles {
docker.temp = 'auto'
docker.enabled = true
process {
withname: sort_bam {
withName: sort_bam {
container = "sambamba:0.6.7"
}
}
}
psmn {
process{
withname: sort_bam {
withName: sort_bam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "sambamba/0.6.7"
executor = "sge"
......
......@@ -3,14 +3,14 @@ profiles {
docker.temp = 'auto'
docker.enabled = true
process {
withname: split_bam {
withName: split_bam {
container = "sambamba:0.6.7"
}
}
}
psmn {
process{
withname: split_bam {
withName: split_bam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "sambamba/0.6.7"
executor = "sge"
......
......@@ -3,14 +3,14 @@ profiles {
docker.temp = 'auto'
docker.enabled = true
process {
withname: dedup_sam {
withName: dedup_sam {
container = "samblaster:0.1.24"
}
}
}
psmn {
process{
withname: dedup_sam {
withName: dedup_sam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "samblaster/0.1.24"
executor = "sge"
......
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