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Unverified Commit 80b5c871 authored by Laurent Modolo's avatar Laurent Modolo
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nf_modules: update config files to match psmn lowercase module names

parent 67f677d7
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......@@ -18,7 +18,7 @@ profiles {
process{
withName: compute_mappability {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "MUSIC/6613c53"
module = "music/6613c53"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "20GB"
......@@ -27,7 +27,7 @@ profiles {
}
withName: music_preprocessing {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "MUSIC/6613c53"
module = "music/6613c53"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "20GB"
......@@ -36,7 +36,7 @@ profiles {
}
withName: music_computation {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "MUSIC/6613c53"
module = "music/6613c53"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "20GB"
......
......@@ -12,7 +12,7 @@ profiles {
process{
withName: index_fasta {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "RSEM/1.3.0:SAMtools/1.7"
module = "rsem/1.3.0:samtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "30GB"
......
......@@ -12,7 +12,7 @@ profiles {
process{
withName: mapping_fastq {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "RSEM/1.3.0:SAMtools/1.7"
module = "rsem/1.3.0:samtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "30GB"
......
......@@ -12,7 +12,7 @@ profiles {
process{
withName: mapping_fastq {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "RSEM/1.3.0:SAMtools/1.7"
module = "rsem/1.3.0:samtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "30GB"
......
......@@ -12,7 +12,7 @@ profiles {
process{
withName: filter_bam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
module = "samtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "20GB"
......
......@@ -12,7 +12,7 @@ profiles {
process{
withName: index_bam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
module = "samtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "20GB"
......
......@@ -12,7 +12,7 @@ profiles {
process{
withName: sort_bam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
module = "samtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "20GB"
......
......@@ -12,7 +12,7 @@ profiles {
process{
withName: split_bam {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
module = "samtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "20GB"
......
......@@ -12,7 +12,7 @@ profiles {
process{
withName: fastq_dump {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SRAtoolkit/2.8.2"
module = "sratoolkit/2.8.2"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "20GB"
......
......@@ -22,7 +22,7 @@ profiles {
process{
withName: trimming {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "UrQt/d62c1f8"
module = "urqt/d62c1f8"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "5GB"
......
......@@ -22,7 +22,7 @@ profiles {
process{
withName: trimming {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "UrQt/d62c1f8"
module = "urqt/d62c1f8"
executor = "sge"
clusterOptions = "-m e -cwd -V"
cpus = 16
......
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