multiqc: fix psmn config files

src/nf_modules/multiqc/multiqc_paired.config

@@ -40,8 +40,6 @@ profiles {
         cpus = 1
         memory = "5GB"
         time = "6h"
-        queueSize = 1.70
-        pollInterval = "60sec"
         queue = "monointeldeb128"
       }
       withName: multiqc {
@@ -51,8 +49,6 @@ profiles {
         cpus = 1
         memory = "5GB"
         time = "6h"
-        queueSize = 1.70
-        pollInterval = "60sec"
         queue = "monointeldeb128"
       }
     }
@@ -68,8 +64,7 @@ profiles {
         stageInMode = "copy"
         stageOutMode = "rsync"
         executor = "sge"
-        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        "
+        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r"
         cpus = 1
         queue = "huge"
       }
@@ -79,8 +74,7 @@ profiles {
         stageInMode = "copy"
         stageOutMode = "rsync"
         executor = "sge"
-        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        "
+        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r"
         cpus = 1
         queue = "huge"
       }

src/nf_modules/multiqc/multiqc_single.config

@@ -33,14 +33,21 @@ profiles {
     singularity.runOptions = "--bind /Xnfs,/scratch"
     process{
       withName: fastqc_fastq {
+        container = "lbmc/fastqc:0.11.5"
+        executor = "sge"
+        clusterOptions = "-cwd -V"
+        cpus = 1
+        memory = "5GB"
+        time = "6h"
+        queue = "monointeldeb128"
+      }
+      withName: multiqc {
         container = "lbmc/multiqc:1.7"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
         memory = "5GB"
         time = "6h"
-        queueSize = 1.70
-        pollInterval = "60sec"
         queue = "monointeldeb128"
       }
     }
@@ -56,8 +63,7 @@ profiles {
         stageInMode = "copy"
         stageOutMode = "rsync"
         executor = "sge"
-        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        "
+        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r"
         cpus = 1
         queue = "huge"
       }
@@ -67,8 +73,7 @@ profiles {
         stageInMode = "copy"
         stageOutMode = "rsync"
         executor = "sge"
-        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        "
+        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r"
         cpus = 1
         queue = "huge"
       }