Bowtie2: add sambamba and samblaster to docker

src/docker_modules/Bowtie2/2.3.4.1/Dockerfile

-FROM ubuntu:18.04
+FROM sambamba:0.6.7
 MAINTAINER Laurent Modolo
 
 ENV BOWTIE2_VERSION=2.3.4.1
@@ -10,3 +10,21 @@ ENV PACKAGES bowtie2=${BOWTIE2_VERSION}* \
 RUN apt-get update && \
     apt-get install -y --no-install-recommends ${PACKAGES} && \
     apt-get clean
+
+ENV PACKAGES curl=7.58.0* \
+    ca-certificates=20180409 \
+    build-essential=12.4* \
+    zlib1g-dev=1:1.2.11*
+
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends ${PACKAGES} && \
+    apt-get clean
+
+ENV SAMBLASTER_VERSION=0.1.24
+RUN curl -k -L https://github.com/GregoryFaust/samblaster/releases/download/v.${SAMBLASTER_VERSION}/samblaster-v.${SAMBLASTER_VERSION}.tar.gz -o samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \
+tar xvf samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \
+cd samblaster-v.${SAMBLASTER_VERSION}/ && \
+make && \
+cp samblaster /usr/bin && \
+cd .. && \
+rm -R samblaster-v.${SAMBLASTER_VERSION}/