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Verified Commit 61d6bb79 authored by Laurent Modolo's avatar Laurent Modolo
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gatk4: fix typo :264

parent 8818f78d
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...@@ -261,7 +261,7 @@ process personalized_genome { ...@@ -261,7 +261,7 @@ process personalized_genome {
gatk --java-options "-Xmx${xmx_memory}" -T FastaAlternateReferenceMaker\ gatk --java-options "-Xmx${xmx_memory}" -T FastaAlternateReferenceMaker\
-R ${reference} \ -R ${reference} \
-V ${vcf} \ -V ${vcf} \
-o ${file_id.library}_genome.fasta -o ${file_id[0]}_genome.fasta
""" """
} }
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