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LBMC
nextflow
Commits
51f89832
Unverified
Commit
51f89832
authored
6 years ago
by
Laurent Modolo
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peak_calling_single.nf: select lp0 autoamtically
parent
3bc22f3a
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src/nf_modules/MUSIC/peak_calling_single.nf
+5
-6
5 additions, 6 deletions
src/nf_modules/MUSIC/peak_calling_single.nf
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5 additions
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src/nf_modules/MUSIC/peak_calling_single.nf
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6
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51f89832
params.reads_size = 100
params.frag_size = 200
params.
begin
_l = 50
params.
end
_l =
5
00
params.
step
_l = 50
params.
min
_l =
2
00
params.max_l = 5000
log.info "bam files : ${params.bam}"
log.info "index files : ${params.index}"
log.info "fasta files : ${params.fasta}"
...
...
@@ -94,11 +94,10 @@ tar -xf ${control} -C control/
tar -xf ${chip} -C chip/
MUSIC -get_per_win_p_vals_vs_FC -chip chip/ -control control/ \
-l_win_step ${params.
end
_l} \
-l_win_min ${params.
end
_l} -l_win_max ${params.
end_l * 10
}
-l_win_step ${params.
step
_l} \
-l_win_min ${params.
min
_l} -l_win_max ${params.
max_l
}
MUSIC -get_multiscale_punctate_ERs \
-chip chip/ -control control/ -mapp mappability/ \
-begin_l ${params.begin_l} -end_l ${params.end_l} -step 1.1 \
-l_mapp ${params.reads_size} -l_frag ${params.frag_size} -q_val 1 -l_p 0
ls -l
"""
...
...
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