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Verified Commit 4027951a authored by Laurent Modolo's avatar Laurent Modolo
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doc/getting_started.md: fix typo :82

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......@@ -79,7 +79,7 @@ If the containers are not found locally, they are automatically downloaded befor
To have access to `charliecloud` on the PSMN you need to add the followin path to your `PATH` variable:
````
```sh
PATH=/Xnfs/abc/charliecloud_bin/:$PATH
```
......@@ -87,7 +87,6 @@ You can add this line in your `~/.bashrc` or `~/.zshrc` file
When running `nextflow` on the PSMN, we recommend to use `tmux` before launching the pipeline:
```sh
tmux
./nextflow src/solution_RNASeq.nf --fastq "data/tiny_dataset/fastq/tiny2_R{1,2}.fastq.gz" --fasta "data/tiny_dataset/fasta/tiny_v2_10.fasta" --bed "data/tiny_dataset/annot/tiny.bed" -profile psmn
......@@ -104,4 +103,7 @@ You can edit the `src/ccin2p3.pbs` file to personalize your `nextflow` command a
```sh
qsub src/ccin2p3.pbs
```
````
```
```
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