cutadapt: config change version from 2.1 to 2.4

src/nf_modules/cutadapt/adaptor_removal_paired.config

@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         cpus = 1
       }
     }
@@ -14,7 +14,7 @@ profiles {
     singularity.cacheDir = "./bin/"
     process {
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         cpus = 1
       }
     }
@@ -23,7 +23,7 @@ profiles {
     process{
       withName: adaptor_removal {
         beforeScript = "source $baseDir/.conda_psmn.sh"
-        conda = "$baseDir/.conda_envs/cutadapt_2.1"
+        conda = "$baseDir/.conda_envs/cutadapt_2.4"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
@@ -39,7 +39,7 @@ profiles {
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         scratch = true
         stageInMode = "copy"
         stageOutMode = "rsync"

src/nf_modules/cutadapt/adaptor_removal_single.config

@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         cpus = 1
       }
     }
@@ -14,7 +14,7 @@ profiles {
     singularity.cacheDir = "./bin/"
     process {
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         cpus = 1
       }
     }
@@ -23,7 +23,7 @@ profiles {
     process{
       withName: adaptor_removal {
         beforeScript = "source $baseDir/.conda_psmn.sh"
-        conda = "$baseDir/.conda_envs/cutadapt_2.1"
+        conda = "$baseDir/.conda_envs/cutadapt_2.4"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
@@ -39,7 +39,7 @@ profiles {
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         scratch = true
         stageInMode = "copy"
         stageOutMode = "rsync"

src/nf_modules/cutadapt/trimming_paired.config

@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: trimming {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         cpus = 1
       }
     }
@@ -14,7 +14,7 @@ profiles {
     singularity.cacheDir = "./bin/"
     process {
       withName: trimming {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         cpus = 1
       }
     }
@@ -23,7 +23,7 @@ profiles {
     process{
       withName: trimming {
         beforeScript = "source $baseDir/.conda_psmn.sh"
-        conda = "$baseDir/.conda_envs/cutadapt_2.1"
+        conda = "$baseDir/.conda_envs/cutadapt_2.4"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
@@ -39,7 +39,7 @@ profiles {
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: trimming {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         scratch = true
         stageInMode = "copy"
         stageOutMode = "rsync"

src/nf_modules/cutadapt/trimming_single.config

@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: trimming {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         cpus = 1
       }
     }
@@ -14,7 +14,7 @@ profiles {
     singularity.cacheDir = "./bin/"
     process {
       withName: trimming {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         cpus = 1
       }
     }
@@ -23,7 +23,7 @@ profiles {
     process{
       withName: trimming {
         beforeScript = "source $baseDir/.conda_psmn.sh"
-        conda = "$baseDir/.conda_envs/cutadapt_2.1"
+        conda = "$baseDir/.conda_envs/cutadapt_2.4"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
@@ -39,7 +39,7 @@ profiles {
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: trimming {
-        container = "lbmc/cutadapt:2.1"
+        container = "lbmc/cutadapt:2.4"
         scratch = true
         stageInMode = "copy"
         stageOutMode = "rsync"