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Verified Commit 260389ed authored by Laurent Modolo's avatar Laurent Modolo
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kb: add -m option to control memory

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src/nf_modules/kb/main.nf
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...@@ -185,6 +185,7 @@ process kb_marseq { ...@@ -185,6 +185,7 @@ process kb_marseq {
tuple val(file_id), path("*_report.txt"), emit: report tuple val(file_id), path("*_report.txt"), emit: report
script: script:
memory = "${task.memory}" - ~/\s*GB/
if (file_id instanceof List){ if (file_id instanceof List){
file_prefix = file_id[0] file_prefix = file_id[0]
} else { } else {
...@@ -199,7 +200,7 @@ process kb_marseq { ...@@ -199,7 +200,7 @@ process kb_marseq {
""" """
mkdir ${file_prefix} mkdir ${file_prefix}
kb count -t ${task.cpus} \ kb count -t ${task.cpus} \
-m ${task.memory} \ -m ${memory} \
-i ${index} \ -i ${index} \
-g ${transcript_to_gene} \ -g ${transcript_to_gene} \
${whitelist_param} \ ${whitelist_param} \
......
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