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Verified Commit 23755281 authored by Laurent Modolo's avatar Laurent Modolo
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typo in gatk3 to DSL2

parent 4a115a8a
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...@@ -88,9 +88,9 @@ gatk3 -T VariantFiltration \ ...@@ -88,9 +88,9 @@ gatk3 -T VariantFiltration \
""" """
} }
high_confidence_indel_filter = "QD < 2.0 || FS > 200.0 || ReadPosRankSum < -20.0 || SOR > 10.0" high_confidence_indel_filter = "QD < 3.0 || FS > 200.0 || ReadPosRankSum < -20.0 || SOR > 10.0"
process high_confidence_indel { process high_confidence_indels {
container = "${container_url}" container = "${container_url}"
label "big_mem_mono_cpus" label "big_mem_mono_cpus"
tag "$file_id" tag "$file_id"
......
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