psmn: remove mail report from config files

src/nf_modules/bedtools/fasta_from_bed.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bedtools/2.25.0"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"

src/nf_modules/bowtie/indexing.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bowtie/1.2.2"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         memory = "20GB"
         cpus = 16
         time = "12h"

src/nf_modules/bowtie/mapping_paired.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bowtie/1.2.2:samtools/1.7"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/bowtie/mapping_single.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bowtie/1.2.2:samtools/1.7"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/bowtie2/indexing.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bowtie2/2.3.4.1"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "20GB"
         time = "12h"

src/nf_modules/bowtie2/mapping_paired.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bowtie2/2.3.4.1:samtools/1.7"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/bowtie2/mapping_single.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bowtie2/2.3.4.1:samtools/1.7"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/bwa/indexing.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bwa/0.7.17"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/bwa/mapping_paired.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "bwa/0.7.17"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/cutadapt/adaptor_removal_paired.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "cutadapt/1.14"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"

src/nf_modules/cutadapt/adaptor_removal_single.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "cutadapt/1.14"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"

src/nf_modules/cutadapt/trimming_paired.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "cutadapt/1.14"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"

src/nf_modules/cutadapt/trimming_single.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "cutadapt/1.14"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"

src/nf_modules/deeptools/bam_to_bigwig.config

@@ -32,7 +32,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "sambamba/0.6.7"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"
@@ -43,7 +43,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "deeptools/3.0.2"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/deeptools/compute_matrix.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "deeptools/3.0.2"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/deeptools/plot_profile.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "deeptools/3.0.2"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"

src/nf_modules/fastqc/fastqc_paired.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "fastqc/0.11.5"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"

src/nf_modules/fastqc/fastqc_single.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "fastqc/0.11.5"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"

src/nf_modules/htseq/htseq.config

@@ -28,7 +28,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "samtools/1.7"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"
@@ -38,7 +38,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "htseq/0.8.0"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "20GB"
         time = "12h"

src/nf_modules/kallisto/indexing.config

@@ -24,7 +24,7 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "kallisto/0.44.0"
         executor = "sge"
-        clusterOptions = "-m e -cwd -V"
+        clusterOptions = "-cwd -V"
         cpus = 16
         memory = "30GB"
         time = "24h"