Bowtie.def

Bootstrap: docker
From: ubuntu:18.04

%labels
MAINTAINER Laurent Modolo

%post
BOWTIE_VERSION=1.2.2
SAMTOOLS_VERSION=1.7
PACKAGES="bowtie=${BOWTIE_VERSION}* \
samtools=${SAMTOOLS_VERSION}*"

apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean

%environment
export BOWTIE_VERSION=1.2.2
export SAMTOOLS_VERSION=1.7

%runscript
exec /bin/bash "$@"